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aldh18a1 aldehyde dehydrogenase 18 family, member A1 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108901695, updated on 10-Apr-2024

Summary

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Gene symbol
aldh18a1
Gene description
aldehyde dehydrogenase 18 family, member A1
See related
EnsemblRapid:ENSLCAG00010001287
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG23
Exon count:
19
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG23 NC_066855.1 (10980188..10992622)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017366263.1 (308680..381230)

Linkage Group LG23 - NC_066855.1Genomic Context describing neighboring genes Neighboring gene neurogenic differentiation factor 2 Neighboring gene protein phosphatase 1 regulatory subunit 1B Neighboring gene phenylethanolamine N-methyltransferase Neighboring gene crystallin, gamma MX Neighboring gene crystallin, gamma MX, like 2 Neighboring gene transcription factor 7 like 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glutamate 5-kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glutamate-5-semialdehyde dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proline biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-1-pyrroline-5-carboxylate synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066855.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    10980188..10992622
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018703263.2 → XP_018558779.1  delta-1-pyrroline-5-carboxylate synthase isoform X1

    UniProtKB/TrEMBL
    A0A4W6BNN1, A0A4W6BSG6

  2. XM_018703266.2 → XP_018558782.1  delta-1-pyrroline-5-carboxylate synthase isoform X2

    UniProtKB/TrEMBL
    A0A4W6BNN1
    Related
    ENSLCAP00010002329.2, ENSLCAT00010002417.2

  3. XM_018703264.2 → XP_018558780.1  delta-1-pyrroline-5-carboxylate synthase isoform X1

    UniProtKB/TrEMBL
    A0A4W6BNN1, A0A4W6BSG6

  4. XM_018703265.2 → XP_018558781.1  delta-1-pyrroline-5-carboxylate synthase isoform X1

    UniProtKB/TrEMBL
    A0A4W6BNN1, A0A4W6BSG6
    Related
    ENSLCAP00010002322.2, ENSLCAT00010002410.2

  5. XM_018703268.2 → XP_018558784.1  delta-1-pyrroline-5-carboxylate synthase isoform X3

    UniProtKB/TrEMBL
    A0A4W6BNF0, A0A4W6BVF6
    Related
    ENSLCAP00010002341.2, ENSLCAT00010002429.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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