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appbp2 amyloid beta precursor protein (cytoplasmic tail) binding protein 2 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108900267, updated on 10-Apr-2024

Summary

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Gene symbol
appbp2
Gene description
amyloid beta precursor protein (cytoplasmic tail) binding protein 2
See related
EnsemblRapid:ENSLCAG00010004484
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG21
Exon count:
13
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG21 NC_066853.1 (26453747..26468111, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017363841.1 (2208831..2221177)

Linkage Group LG21 - NC_066853.1Genomic Context describing neighboring genes Neighboring gene tyrosine kinase receptor Cad96Ca Neighboring gene ubiquitin specific peptidase 32 Neighboring gene CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent, 1Da Neighboring gene BRCA1 interacting helicase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
amyloid protein-binding protein 2
Names
amyloid beta precursor protein binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066853.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    26453747..26468111 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018701241.2 → XP_018556757.1  amyloid protein-binding protein 2

    UniProtKB/TrEMBL
    A0A4W6C6M3, A0A4W6C7K9
    Related
    ENSLCAP00010009533.2, ENSLCAT00010009751.2
    Conserved Domains (2) summary
    sd00006
    Location:429 → 457
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:427 → 504
    TPR_12; Tetratricopeptide repeat
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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