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ankrd16 ankyrin repeat domain 16 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108897493, updated on 10-Apr-2024

Summary

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Gene symbol
ankrd16
Gene description
ankyrin repeat domain 16
See related
EnsemblRapid:ENSLCAG00010018071
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG18
Exon count:
8
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG18 NC_066850.1 (16538428..16542391)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017365869.1 (1103388..1107356)

Linkage Group LG18 - NC_066850.1Genomic Context describing neighboring genes Neighboring gene adrenomedullin 2a Neighboring gene glycosyltransferase 8 domain containing 2 Neighboring gene transfer RNA tyrosine (anticodon GUA) Neighboring gene GDP dissociation inhibitor 2 Neighboring gene ankyrin repeat and SOCS box containing 13a, tandem duplicate 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ankyrin repeat domain-containing protein 16

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066850.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    16538428..16542391
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018697159.2 → XP_018552675.1  ankyrin repeat domain-containing protein 16 isoform X1

    UniProtKB/TrEMBL
    A0A4W6EM93
    Related
    ENSLCAP00010038614.2, ENSLCAT00010039531.2

  2. XM_051077596.1 → XP_050933553.1  ankyrin repeat domain-containing protein 16 isoform X2

    Related
    ENSLCAP00010072093.1, ENSLCAT00010081086.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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