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aldh6a1 aldehyde dehydrogenase 6 family, member A1 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108892554, updated on 10-Apr-2024

Summary

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Gene symbol
aldh6a1
Gene description
aldehyde dehydrogenase 6 family, member A1
See related
EnsemblRapid:ENSLCAG00010020495
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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See aldh6a1 in Genome Data Viewer
Location:
chromosome: LG19
Exon count:
13
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG19 NC_066851.1 (10943623..10950186)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017364990.1 (1808110..1814637)

Linkage Group LG19 - NC_066851.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108892552 Neighboring gene glutathione S-transferase zeta 1 Neighboring gene basal body-orientation factor 1 Neighboring gene ectonucleoside triphosphate diphosphohydrolase 5a Neighboring gene coenzyme Q6 monooxygenase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables malonate-semialdehyde dehydrogenase (acetylating) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables methylmalonate-semialdehyde dehydrogenase (acylating, NAD) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in thymine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in valine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066851.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    10943623..10950186
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018690178.2 → XP_018545694.1  methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A4W6F0Q8, A0A4W6F340
    Related
    ENSLCAP00010044247.2, ENSLCAT00010045347.2

  2. XM_051078062.1 → XP_050934019.1  methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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