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atpaf1 ATP synthase mitochondrial F1 complex assembly factor 1 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108879609, updated on 10-Apr-2024

Summary

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Gene symbol
atpaf1
Gene description
ATP synthase mitochondrial F1 complex assembly factor 1
See related
EnsemblRapid:ENSLCAG00010021665
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG17
Exon count:
9
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG17 NC_066849.1 (24917221..24921542, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017367346.1 (1296970..1301286, complement)

Linkage Group LG17 - NC_066849.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein C1orf226 homolog Neighboring gene tripartite motif-containing protein 65 Neighboring gene MAF bZIP transcription factor Aa Neighboring gene zinc finger CCCH-type containing 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mitochondrial proton-transporting ATP synthase complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP synthase mitochondrial F1 complex assembly factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066849.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    24917221..24921542 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018670940.2 → XP_018526456.1  ATP synthase mitochondrial F1 complex assembly factor 1

    UniProtKB/TrEMBL
    A0A4W6F8A5, A0A4W6F8B1
    Related
    ENSLCAP00010046736.1, ENSLCAT00010047866.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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