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apbb1 amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65) [ Lates calcarifer (barramundi perch) ]

Gene ID: 108876088, updated on 10-Apr-2024

Summary

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Gene symbol
apbb1
Gene description
amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65)
See related
EnsemblRapid:ENSLCAG00010013062
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG21
Exon count:
15
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG21 NC_066853.1 (17003830..17013476)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017367064.1 (653519..663169)

Linkage Group LG21 - NC_066853.1Genomic Context describing neighboring genes Neighboring gene integrin-linked protein kinase Neighboring gene ribosomal RNA processing 8 Neighboring gene roundabout, axon guidance receptor, homolog 1 (Drosophila) Neighboring gene roundabout homolog 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables amyloid-beta binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
amyloid beta precursor protein binding family B member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066853.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    17003830..17013476
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018665400.2 → XP_018520916.1  amyloid beta precursor protein binding family B member 1

    UniProtKB/TrEMBL
    A0A4W6DQI8, A0A4W6DSD9
    Related
    ENSLCAP00010027769.2, ENSLCAT00010028374.2

  2. XM_051065683.1 → XP_050921640.1  amyloid beta precursor protein binding family B member 1

    UniProtKB/TrEMBL
    A0A4W6DQI8
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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