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acss1 acyl-CoA synthetase short chain family member 1 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108873845, updated on 10-Apr-2024

Summary

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Gene symbol
acss1
Gene description
acyl-CoA synthetase short chain family member 1
See related
EnsemblRapid:ENSLCAG00010020694
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG16_LG22
Exon count:
16
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG16_LG22 NC_066848.1 (35767..53844, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017366652.1 (35777..54737, complement)

Linkage Group LG16_LG22 - NC_066848.1Genomic Context describing neighboring genes Neighboring gene adipocyte plasma membrane associated protein Neighboring gene gastrula zinc finger protein XlCGF57.1 Neighboring gene zinc finger protein interacting with ribonucleoprotein K Neighboring gene visual system homeobox 1 homolog, chx10-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables AMP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables acetate-CoA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in acetyl-CoA biosynthetic process from acetate IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acetyl-coenzyme A synthetase 2-like, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066848.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    35767..53844 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018662167.2 → XP_018517683.1  acetyl-coenzyme A synthetase 2-like, mitochondrial

    UniProtKB/TrEMBL
    A0A4W6EZS6, A0A4W6EZT6
    Related
    ENSLCAP00010044640.1, ENSLCAT00010045744.2

  2. XM_018662165.2 → XP_018517681.1  acetyl-coenzyme A synthetase 2-like, mitochondrial

    UniProtKB/TrEMBL
    A0A4W6EZS6, A0A4W6EZT6

  3. XM_018662164.2 → XP_018517680.1  acetyl-coenzyme A synthetase 2-like, mitochondrial

    UniProtKB/TrEMBL
    A0A4W6EZS6, A0A4W6EZT6
    Related
    ENSLCAP00010044624.2, ENSLCAT00010045728.2
Nucleotide Protein
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Gene LinkOut

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