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apcdd1l adenomatosis polyposis coli down-regulated 1-like [ Lates calcarifer (barramundi perch) ]

Gene ID: 108873541, updated on 10-Apr-2024

Summary

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Gene symbol
apcdd1l
Gene description
adenomatosis polyposis coli down-regulated 1-like
See related
EnsemblRapid:ENSLCAG00010015308
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG12
Exon count:
4
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG12 NC_066844.1 (8106254..8121282)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017366603.1 (593403..608442, complement)

Linkage Group LG12 - NC_066844.1Genomic Context describing neighboring genes Neighboring gene proto-oncogene tyrosine-protein kinase Src-like Neighboring gene mannosidase beta like Neighboring gene uncharacterized LOC108873561 Neighboring gene VAMP (vesicle-associated membrane protein)-associated protein B and C Neighboring gene RAB22A, member RAS oncogene family

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Wnt-protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein APCDD1-like
Names
APC down-regulated 1 like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066844.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    8106254..8121282
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018661784.2 → XP_018517300.1  protein APCDD1-like

    UniProtKB/TrEMBL
    A0A4W6E648
    Related
    ENSLCAP00010032533.1, ENSLCAT00010033290.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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