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afap1.L actin filament associated protein 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 108698018, updated on 11-Apr-2024

Summary

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Official Symbol
afap1.L
Official Full Name
actin filament associated protein 1 L homeolog
Primary source
Xenbase:XB-GENE-17343446
Locus tag
XELAEV_18005082mg
See related
EnsemblRapid:ENSXLAG00005001395
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
afap
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Genomic context

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Location:
chromosome: 1L
Exon count:
19
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (25343544..25448275)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (16569126..16671692)

Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene SH3 domain and tetratricopeptide repeats 1 L homeolog Neighboring gene actin binding LIM protein family member 2 L homeolog Neighboring gene sortilin-related VPS10 domain containing receptor 2 L homeolog Neighboring gene U2 spliceosomal RNA Neighboring gene uncharacterized LOC108698020

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables SH2 domain binding IEA
Inferred from Electronic Annotation
more info
  
enables SH3 domain binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
actin filament-associated protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    25343544..25448275
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018228470.2 → XP_018083959.1  actin filament-associated protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8J0TFR7, A0A974DXF3
    Related
    ENSXLAP00005004253.1, ENSXLAT00005004319.1

  2. XM_018228465.2 → XP_018083954.1  actin filament-associated protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8J0TFR1, A0A974DXF3
    Related
    ENSXLAP00005004251.1, ENSXLAT00005004317.1

  3. XM_018228479.2 → XP_018083968.1  actin filament-associated protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8J0TGL4, A0A974DXF3
    Related
    ENSXLAP00005004252.1, ENSXLAT00005004318.1
Nucleotide Protein Strain
Heading Accession and Version

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