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adamts17 ADAM metallopeptidase with thrombospondin type 1 motif, 17 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108271083, updated on 14-Mar-2024

Summary

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Gene symbol
adamts17
Gene description
ADAM metallopeptidase with thrombospondin type 1 motif, 17
See related
Ensembl:ENSIPUG00000023156
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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See adamts17 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 10 NC_030425.2 (20817774..20971444, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 10 NC_030425.1 (9378269..9531332)

Chromosome 10 - NC_030425.2Genomic Context describing neighboring genes Neighboring gene zinc finger, AN1-type domain 6 Neighboring gene 5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase) Neighboring gene membrane integral NOTCH2 associated receptor 1 Neighboring gene ceramide synthase 3a Neighboring gene lines homolog 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
A disintegrin and metalloproteinase with thrombospondin motifs 17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030425.2 Reference Coco_2.0 Primary Assembly

    Range
    20817774..20971444 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017478337.3 → XP_017333826.1  A disintegrin and metalloproteinase with thrombospondin motifs 17 isoform X2

    UniProtKB/TrEMBL
    A0A2D0RUH6

  2. XM_017478336.3 → XP_017333825.1  A disintegrin and metalloproteinase with thrombospondin motifs 17 isoform X1

    UniProtKB/TrEMBL
    A0A2D0RV37
    Related
    ENSIPUP00000034482.1

  3. XM_017478338.3 → XP_017333827.1  A disintegrin and metalloproteinase with thrombospondin motifs 17 isoform X3

    UniProtKB/TrEMBL
    A0A2D0RTK2
    Related
    ENSIPUP00000034489.1
Nucleotide Protein
Heading Accession and Version

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