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arl2bp ADP-ribosylation factor-like 2 binding protein [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108264832, updated on 14-Mar-2024

Summary

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Gene symbol
arl2bp
Gene description
ADP-ribosylation factor-like 2 binding protein
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 4
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 4 NC_071284.1 (12774229..12780148, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) Y NC_061155.1 (14240785..14246162, complement)

Chromosome 4 - NC_071284.1Genomic Context describing neighboring genes Neighboring gene alanyl-tRNA synthetase 1 Neighboring gene transglutaminase 2, like Neighboring gene plasmolipin Neighboring gene ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) Neighboring gene chromosome 4 C15orf39 homolog Neighboring gene phosphopantothenoylcysteine decarboxylase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article
  2. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in maintenance of protein location in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of tyrosine phosphorylation of STAT protein IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial intermembrane space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ADP-ribosylation factor-like protein 2-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_071284.1 Reference Coco_2.0 Primary Assembly

    Range
    12774229..12780148 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053677972.1 → XP_053533947.1  ADP-ribosylation factor-like protein 2-binding protein isoform X2

    UniProtKB/TrEMBL
    A0A9F7R5U7

  2. XM_017466741.3 → XP_017322230.3  ADP-ribosylation factor-like protein 2-binding protein isoform X1

    UniProtKB/TrEMBL
    A0A2D0QXK0
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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