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LOC108179687 uncharacterized LOC108179687 [ Danio rerio (zebrafish) ]

Gene ID: 108179687, updated on 4-Nov-2022

Summary

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Gene symbol
LOC108179687
Gene description
uncharacterized LOC108179687
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
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Genomic context

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See LOC108179687 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (22340798..22348327, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (22685780..22692658, complement)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110438162 Neighboring gene Pim proto-oncogene, serine/threonine kinase, related 66 Neighboring gene Pim proto-oncogene, serine/threonine kinase, related 67 Neighboring gene selenoprotein F

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC108179687

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    22340798..22348327 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021467160.1 → XP_021322835.1  uncharacterized protein LOC108179687 isoform X1

    UniProtKB/TrEMBL
    A0A8M9PNQ7
    Conserved Domains (1) summary
    pfam05380
    Location:72 → 235
    Peptidase_A17; Pao retrotransposon peptidase

  2. XM_021467165.1 → XP_021322840.1  uncharacterized protein LOC108179687 isoform X2

    UniProtKB/TrEMBL
    A0A8M9PNR1
    Conserved Domains (1) summary
    cl02808
    Location:287 → 323
    RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...
Nucleotide Protein Strain
Heading Accession and Version

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