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Gm46111 predicted gene, 46111 [ Mus musculus (house mouse) ]

Gene ID: 108167651, updated on 8-Feb-2024

Summary

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Official Symbol
Gm46111provided by MGI
Official Full Name
predicted gene, 46111provided by MGI
Primary source
MGI:MGI:5825748
See related
AllianceGenome:MGI:5825748
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in testis adult (RPKM 7.2), cortex adult (RPKM 0.9) and 1 other tissue See more
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Genomic context

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See Gm46111 in Genome Data Viewer
Location:
9 A5.3; 9
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (49315708..49322216, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (49404408..49410916, complement)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_24086 Neighboring gene transmembrane protease, serine 5 (spinesin) Neighboring gene STARR-seq mESC enhancer starr_24087 Neighboring gene STARR-seq mESC enhancer starr_24088 Neighboring gene STARR-seq mESC enhancer starr_24089 Neighboring gene predicted gene 4894 Neighboring gene STARR-seq mESC enhancer starr_24090 Neighboring gene dopamine receptor D2 Neighboring gene STARR-seq mESC enhancer starr_24091 Neighboring gene ankyrin repeat and kinase domain containing 1 Neighboring gene tetratricopeptide repeat domain 12 Neighboring gene STARR-seq mESC enhancer starr_24092

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_168533.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC167980

  2. NR_168534.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC167980

  3. NR_168535.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC167980

  4. NR_168536.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC167980

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    49315708..49322216 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version