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LOC107986746 uncharacterized LOC107986746 [ Homo sapiens (human) ]

Gene ID: 107986746, updated on 10-Oct-2023

Summary

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Gene symbol
LOC107986746
Gene description
uncharacterized LOC107986746
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
7q21.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (95645859..95654617)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (96881932..96890707)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 6047 Neighboring gene VISTA enhancer hs1831 Neighboring gene PDK4 antisense RNA 1 Neighboring gene VISTA enhancer hs2505 Neighboring gene pyruvate dehydrogenase kinase 4 Neighboring gene uncharacterized LOC105375409 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr7:95405912-95407111 Neighboring gene Sharpr-MPRA regulatory region 1852 Neighboring gene dynein cytoplasmic 1 intermediate chain 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:95466378-95466994 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26296 Neighboring gene eDlx#27 enhancer in SHFM1 region Neighboring gene MPRA-validated peak6645 silencer Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:95570271-95570871 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:95570872-95571471 Neighboring gene eDlx#26 enhancer in SHFM1 region Neighboring gene uncharacterized LOC124901700

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    95645859..95654617
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001745028.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    96881932..96890707
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007077729.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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