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LOC107984613 uncharacterized LOC107984613 [ Homo sapiens (human) ]

Gene ID: 107984613, updated on 10-Oct-2023

Summary

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Gene symbol
LOC107984613
Gene description
uncharacterized LOC107984613
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
13q34
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (110771344..110778345)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (110001525..110008600)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene cysteinyl-tRNA synthetase 2, mitochondrial Neighboring gene ReSE screen-validated silencer GRCh37_chr13:111364717-111364885 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8012 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5511 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5512 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5513 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5514 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5515 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8013 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:111368201-111368894 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111371617-111372308 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8015 Neighboring gene inhibitor of growth family member 1 Neighboring gene ribosomal protein L21 pseudogene 107 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111445577-111446077 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111446189-111447086 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111450737-111451238 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111464033-111464574 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111464575-111465116 Neighboring gene uncharacterized LOC105370362 Neighboring gene NANOG hESC enhancer GRCh37_chr13:111468190-111468713 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5518 Neighboring gene long intergenic non-protein coding RNA 567

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    110771344..110778345
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007063873.1 RNA Sequence

  2. XR_001750023.2 RNA Sequence

  3. XR_001750022.2 RNA Sequence

  4. XR_001750024.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    110001525..110008600
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007083691.1 RNA Sequence

  2. XR_007083690.1 RNA Sequence

  3. XR_007083692.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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