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Apob-icr Apob intestinal control region [ Mus musculus (house mouse) ]

Gene ID: 106635680, updated on 13-Mar-2024

Summary

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Gene symbol
Apob-icr
Gene description
Apob intestinal control region
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rr366635
Summary
This region contains an enhancer that likely regulates expression of the apolipoprotein B (Apob) gene, located approximately 60 kb downstream. The corresponding region in human contains an enhancer for expression in the intestine, as well as an insulator and putative scaffold/matrix attachment region (S/MAR). [provided by RefSeq, Oct 2015]
Orthologs
human all
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Genomic context

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See Apob-icr in Genome Data Viewer
Location:
chromosome: 12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (7969721..7970412)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (7919721..7920412)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene tudor domain containing 6 pseudogene Neighboring gene Sjogren syndrome antigen B pseudogene Neighboring gene predicted gene, 53751 Neighboring gene apolipoprotein B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Complex control of mouse apolipoprotein B gene expression revealed by targeted duplication. Hinsdale ME, et al. Biochim Biophys Acta, 2005 May 15. PMID 15904874
  2. Identification and characterization of a 315-base pair enhancer, located more than 55 kilobases 5' of the apolipoprotein B gene, that confers expression in the intestine. Antes TJ, et al. J Biol Chem, 2000 Aug 25. PMID 10859308

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Other Names

  • apolipoprotein B ICR
  • regulatory region 366635

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_042892.1 

    Range
    101..792
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    7969721..7970412
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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