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APOBEC3D apolipoprotein B mRNA editing enzyme catalytic subunit 3D [ Macaca nemestrina (pig-tailed macaque) ]

Gene ID: 105464431, updated on 2-May-2024

Summary

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Gene symbol
APOBEC3D
Gene description
apolipoprotein B mRNA editing enzyme catalytic subunit 3D
See related
Ensembl:ENSMNEG00000043316
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Macaca nemestrina
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human all
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Mnem_1.0 (GCF_000956065.1) Unplaced Scaffold NW_012012688.1 (9411520..9422650, complement)

NW_012012688.1Genomic Context describing neighboring genes Neighboring gene apolipoprotein B mRNA editing enzyme catalytic subunit 3G Neighboring gene apolipoprotein B mRNA editing enzyme catalytic subunit 3F Neighboring gene uncharacterized LOC105464429 Neighboring gene DNA dC->dU-editing enzyme APOBEC-3C Neighboring gene DNA dC->dU-editing enzyme APOBEC-3B-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012012688 Unplaced Scaffold Reference Mnem_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytidine deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA cytosine deamination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA demethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytidine to uridine editing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in defense response to virus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of single stranded viral RNA replication via double stranded DNA intermediate IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA dC->dU-editing enzyme APOBEC-3D
Names
DNA dC->dU-editing enzyme APOBEC-3D-like
apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D
NP_001332869.1
XP_011710638.1
XP_024643276.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001345940.1 → NP_001332869.1  DNA dC->dU-editing enzyme APOBEC-3D

    Status: VALIDATED

    Source sequence(s)
    JZLF01046100
    UniProtKB/TrEMBL
    A0A2K6DYE3, A0A2K6DYF9
    Related
    ENSMNEP00000040950.1, ENSMNET00000065445.1
    Conserved Domains (3) summary
    cd01283
    Location:213 → 363
    cytidine_deaminase; Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on ...
    pfam05240
    Location:151 → 195
    APOBEC_C; APOBEC-like C-terminal domain
    pfam08210
    Location:222 → 390
    APOBEC_N; APOBEC-like N-terminal domain

RefSeqs of Annotated Genomes: Macaca nemestrina Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mnem_1.0

Genomic

  1. NW_012012688.1 Reference Mnem_1.0

    Range
    9411520..9422650 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024787508.1 → XP_024643276.1  DNA dC->dU-editing enzyme APOBEC-3D isoform X2

    Conserved Domains (1) summary
    pfam08210
    Location:17 → 185
    APOBEC_N; APOBEC-like N-terminal domain

  2. XM_011712336.2 → XP_011710638.1  DNA dC->dU-editing enzyme APOBEC-3D isoform X1

    UniProtKB/TrEMBL
    A0A2K6DYE3
    Conserved Domains (3) summary
    cd01283
    Location:192 → 342
    cytidine_deaminase; Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on ...
    pfam05240
    Location:130 → 174
    APOBEC_C; APOBEC-like C-terminal domain
    pfam08210
    Location:201 → 369
    APOBEC_N; APOBEC-like N-terminal domain
Nucleotide Protein
Heading Accession and Version

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