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LOC105378914 uncharacterized LOC105378914 [ Homo sapiens (human) ]

Gene ID: 105378914, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105378914
Gene description
uncharacterized LOC105378914
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 1.9), skin (RPKM 0.5) and 3 other tissues See more
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Genomic context

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Location:
1p13.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (114581843..114587619)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (114593273..114598848)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene pyruvate kinase M1/2 pseudogene 1 Neighboring gene BCAS2 pre-mRNA processing factor Neighboring gene DENN domain containing 2C Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:115142450-115143649 Neighboring gene MPRA-validated peak379 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1221 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1547 Neighboring gene uncharacterized LOC124904354 Neighboring gene adenosine monophosphate deaminase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    114581843..114587619
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_947719.4 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    114593273..114598848
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007070546.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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