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LOC105374699 uncharacterized LOC105374699 [ Homo sapiens (human) ]

Gene ID: 105374699, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105374699
Gene description
uncharacterized LOC105374699
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105374699 in Genome Data Viewer
Location:
5p13.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (29086278..29143274, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (29200464..29257473, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene MPRA-validated peak5207 silencer Neighboring gene SUCLG2 pseudogene 4 Neighboring gene uncharacterized LOC101929645 Neighboring gene uncharacterized LOC124900206 Neighboring gene basal body orientation factor 1 pseudogene Neighboring gene long intergenic non-protein coding RNA 2109 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:29191372-29191918 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:29191919-29192465 Neighboring gene long intergenic non-protein coding RNA 2064

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    29086278..29143274 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_925880.3 RNA Sequence

  2. XR_925879.3 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NW_003571036.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    58674..115657 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_952177.3 RNA Sequence

  2. XR_952176.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    29200464..29257473 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007076302.1 RNA Sequence

  2. XR_007076301.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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