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LOC105374114 uncharacterized LOC105374114 [ Homo sapiens (human) ]

Gene ID: 105374114, updated on 26-Oct-2023

Summary

Gene symbol
LOC105374114
Gene description
uncharacterized LOC105374114
See related
Ensembl:ENSG00000248468
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 1.1), colon (RPKM 1.0) and 24 other tissues See more
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Genomic context

Location:
3q22.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (131502909..131520877)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (134246597..134264623)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374110 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:131221451-131222137 Neighboring gene mitochondrial ribosomal protein L3 Neighboring gene small nucleolar RNA, H/ACA box 58 Neighboring gene BCL2 like 12 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14738 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:131287110-131287684 Neighboring gene copine 4 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20534 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:131515358-131515894 Neighboring gene uncharacterized LOC105374113 Neighboring gene Sharpr-MPRA regulatory region 7150

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_189110.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC107027
  2. NR_189111.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC107027
  3. NR_189112.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC107027
  4. NR_189113.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC107027
  5. NR_189114.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC107027
  6. NR_189115.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC107027
  7. NR_189116.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC107027
  8. NR_189117.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC107027
  9. NR_189118.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC107027

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    131502909..131520877
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007096087.1 RNA Sequence

    Related
    ENST00000663361.1
  2. XR_924495.4 RNA Sequence

    Related
    ENST00000660541.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    134246597..134264623
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007073837.1 RNA Sequence

  2. XR_007073836.1 RNA Sequence