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Gm39540 predicted gene, 39540 [ Mus musculus (house mouse) ]

Gene ID: 105243729, updated on 8-Feb-2024

Summary

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Official Symbol
Gm39540provided by MGI
Official Full Name
predicted gene, 39540provided by MGI
Primary source
MGI:MGI:5622425
See related
AllianceGenome:MGI:5622425
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
X F3; X
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (150792637..150797302)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (152009641..152014306)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene hydroxysteroid (17-beta) dehydrogenase 10 Neighboring gene RIB43A domain with coiled-coils 1 Neighboring gene STARR-seq mESC enhancer starr_48089 Neighboring gene structural maintenance of chromosomes 1A Neighboring gene predicted gene 15267 Neighboring gene predicted gene 15266

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    150792637..150797302
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_004940448.1 RNA Sequence

  2. XR_878279.3 RNA Sequence

  3. XR_878280.3 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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