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adamts17 ADAM metallopeptidase with thrombospondin type 1 motif, 17 [ Esox lucius (northern pike) ]

Gene ID: 105014446, updated on 13-Mar-2024

Summary

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Gene symbol
adamts17
Gene description
ADAM metallopeptidase with thrombospondin type 1 motif, 17
See related
EnsemblRapid:ENSELUG00000024363
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Orthologs
human zebrafish all
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Genomic context

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See adamts17 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
24
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 2 NC_047570.1 (30135334..30248741, complement)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG02 NC_025969.4 (9731053..9844532)

Chromosome 2 - NC_047570.1Genomic Context describing neighboring genes Neighboring gene 5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase) Neighboring gene membrane integral NOTCH2 associated receptor 1 Neighboring gene ceramide synthase 3a Neighboring gene lines homolog 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei. Rondeau EB, et al. PLoS One, 2014. PMID 25069045, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
A disintegrin and metalloproteinase with thrombospondin motifs 17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047570.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    30135334..30248741 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010876778.3 → XP_010875080.3  A disintegrin and metalloproteinase with thrombospondin motifs 17 isoform X2

    UniProtKB/TrEMBL
    A0A6Q2Y151
    Related
    ENSELUP00000091000.1, ENSELUT00000107873.1
    Conserved Domains (6) summary
    smart00209
    Location:564 → 616
    TSP1; Thrombospondin type 1 repeats
    cd04273
    Location:250 → 467
    ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
    pfam05986
    Location:720 → 829
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam01562
    Location:70 → 183
    Pep_M12B_propep; Reprolysin family propeptide
    pfam17771
    Location:484 → 551
    ADAM_CR_2; ADAM cysteine-rich domain
    pfam19030
    Location:1024 → 1076
    TSP1_ADAMTS; Thrombospondin type 1 domain

  2. XM_020053303.2 → XP_019908862.2  A disintegrin and metalloproteinase with thrombospondin motifs 17 isoform X1

    UniProtKB/TrEMBL
    A0A6Q2Y151
    Related
    ENSELUP00000098022.1, ENSELUT00000108495.1
    Conserved Domains (6) summary
    smart00209
    Location:564 → 616
    TSP1; Thrombospondin type 1 repeats
    cd04273
    Location:250 → 467
    ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
    pfam05986
    Location:759 → 854
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam01562
    Location:70 → 183
    Pep_M12B_propep; Reprolysin family propeptide
    pfam17771
    Location:484 → 551
    ADAM_CR_2; ADAM cysteine-rich domain
    pfam19030
    Location:1049 → 1101
    TSP1_ADAMTS; Thrombospondin type 1 domain
Nucleotide Protein
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