U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

APOBEC3C apolipoprotein B mRNA editing enzyme catalytic subunit 3C [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 103888537, updated on 26-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
APOBEC3C
Gene description
apolipoprotein B mRNA editing enzyme catalytic subunit 3C
Locus tag
CR201_G0024779
See related
Ensembl:ENSPPYG00000011832
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 23
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 23 NC_085929.1 (45518300..45524469)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 22 NC_072007.1 (24616403..24622571)

Chromosome 23 - NC_085929.1Genomic Context describing neighboring genes Neighboring gene apolipoprotein B mRNA editing enzyme catalytic subunit 3A Neighboring gene apolipoprotein B mRNA editing enzyme catalytic subunit 3B Neighboring gene DNA dC->dU-editing enzyme APOBEC-3F Neighboring gene uncharacterized LOC134761210 Neighboring gene uncharacterized LOC129052663 Neighboring gene apolipoprotein B mRNA editing enzyme catalytic subunit 3G

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytidine deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deoxycytidine deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA cytosine deamination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA demethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytidine to uridine editing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in defense response to virus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of single stranded viral RNA replication via double stranded DNA intermediate IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
DNA dC->dU-editing enzyme APOBEC-3C

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_085929.1 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    45518300..45524469
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009234377.3 → XP_009232652.1  DNA dC->dU-editing enzyme APOBEC-3C

    UniProtKB/TrEMBL
    A0A2J8UWQ2, A0A6D2XNM9, H2P4E8
    Related
    ENSPPYP00000013199.2
    Conserved Domains (1) summary
    pfam08210
    Location:17 → 187
    APOBEC_N; APOBEC-like N-terminal domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.