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ABCB1 ATP binding cassette subfamily B member 1 [ Serinus canaria (Common canary) ]

Gene ID: 103812800, updated on 3-Apr-2024

Summary

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Gene symbol
ABCB1
Gene description
ATP binding cassette subfamily B member 1
See related
EnsemblRapid:ENSSCAG00000011478
Gene type
protein coding
RefSeq status
MODEL
Organism
Serinus canaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Fringillidae; Carduelinae; Serinus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
31
Annotation release Status Assembly Chr Location
RS_2023_02 current serCan2020 (GCF_022539315.1) 2 NC_066315.1 (21556684..21605108, complement)

Chromosome 2 - NC_066315.1Genomic Context describing neighboring genes Neighboring gene acyl-CoA binding domain containing 7 Neighboring gene oleoyl-ACP hydrolase Neighboring gene carnitine O-octanoyltransferase Neighboring gene RUN domain containing 3B Neighboring gene solute carrier family 25 member 40

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066315.1 Chromosome 2 Reference serCan2020 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent translocase ABCB1
Names
ATP-binding cassette, sub-family B (MDR/TAP), member 1
multidrug resistance protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022539315.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference serCan2020 Primary Assembly

Genomic

  1. NC_066315.1 Reference serCan2020 Primary Assembly

    Range
    21556684..21605108 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018909383.3 → XP_018764928.1  ATP-dependent translocase ABCB1 isoform X4

    Conserved Domains (3) summary
    cd03249
    Location:165 → 404
    ABC_MTABC3_MDL1_MDL2; ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins
    cd07346
    Location:45 → 95
    ABC_6TM_exporters; TM helix 5 [structural motif]
    cl38913
    Location:25 → 148
    ABC_6TM_exporters; Six-transmembrane helical domain of the ATP-binding cassette transporters

  2. XM_050971261.1 → XP_050827218.1  ATP-dependent translocase ABCB1 isoform X2

    Related
    ENSSCAP00000015679.2, ENSSCAT00000017554.2

  3. XM_009085927.4 → XP_009084175.2  ATP-dependent translocase ABCB1 isoform X1

    UniProtKB/TrEMBL
    A0A8C9NBQ8
    Related
    ENSSCAP00000015695.2, ENSSCAT00000017570.2
    Conserved Domains (1) summary
    PTZ00265
    Location:48 → 1302
    PTZ00265; multidrug resistance protein (mdr1); Provisional

  4. XM_018909382.3 → XP_018764927.2  ATP-dependent translocase ABCB1 isoform X3

    Conserved Domains (3) summary
    cd03249
    Location:401 → 637
    ABC_MTABC3_MDL1_MDL2; ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins
    cd18558
    Location:63 → 373
    ABC_6TM_Pgp_ABCB1; Six-transmembrane helical domain of P-glycoprotein 1 (Pgp) and related proteins
    cd18578
    Location:731 → 924
    ABC_6TM_Pgp_ABCB1_D2_like; Six-transmembrane helical domain 2 (TMD2) of P-glycoprotein 1 (Pgp) and related proteins
Nucleotide Protein
Heading Accession and Version

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