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Adamtsl4 ADAMTS like 4 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103729112, updated on 11-Mar-2024

Summary

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Gene symbol
Adamtsl4
Gene description
ADAMTS like 4
See related
Ensembl:ENSNGAG00000000766
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Adamtsl4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008331994.1 (340123..352506, complement)

NW_008331994.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L35a pseudogene Neighboring gene uncharacterized LOC115069269 Neighboring gene MCL1 apoptosis regulator, BCL2 family member Neighboring gene uncharacterized LOC115069268

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008331994 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ADAMTS-like protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008331994.1 Reference S.galili_v1.0 Primary Assembly

    Range
    340123..352506 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008827086.3 → XP_008825308.2  ADAMTS-like protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A8C6QCF1
    Related
    ENSNGAP00000001069.1, ENSNGAT00000001087.1
    Conserved Domains (4) summary
    smart00209
    Location:960 → 1006
    TSP1; Thrombospondin type 1 repeats
    PHA03247
    Location:86 → 368
    PHA03247; large tegument protein UL36; Provisional
    pfam05986
    Location:465 → 579
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam08686
    Location:1014 → 1043
    PLAC; PLAC (protease and lacunin) domain

  2. XM_029560614.1 → XP_029416474.1  ADAMTS-like protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A8C6QCF1
    Conserved Domains (4) summary
    smart00209
    Location:811 → 857
    TSP1; Thrombospondin type 1 repeats
    PHA03247
    Location:38 → 219
    PHA03247; large tegument protein UL36; Provisional
    pfam05986
    Location:316 → 430
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam08686
    Location:865 → 894
    PLAC; PLAC (protease and lacunin) domain

  3. XM_029560615.1 → XP_029416475.1  ADAMTS-like protein 4 isoform X3

    Conserved Domains (3) summary
    smart00209
    Location:46 → 70
    TSP1; Thrombospondin type 1 repeats
    PHA03247
    Location:86 → 368
    PHA03247; large tegument protein UL36; Provisional
    pfam05986
    Location:465 → 579
    ADAM_spacer1; ADAM-TS Spacer 1

  4. XM_017796594.2 → XP_017652083.1  ADAMTS-like protein 4 isoform X4

    Conserved Domains (3) summary
    smart00209
    Location:46 → 70
    TSP1; Thrombospondin type 1 repeats
    PHA03247
    Location:86 → 368
    PHA03247; large tegument protein UL36; Provisional
    pfam05986
    Location:465 → 579
    ADAM_spacer1; ADAM-TS Spacer 1
Nucleotide Protein
Heading Accession and Version

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