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LOC103643875 teosinte branched1 [ Zea mays ]

Gene ID: 103643875, updated on 14-Dec-2023

Summary

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Gene symbol
LOC103643875
Gene description
teosinte branched1
Locus tag
ZEAMMB73_Zm00001d033673
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
tb1; umc1082
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Genomic context

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See LOC103643875 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 1 NC_050096.1 (272330844..272332595)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 1 NC_024459.2 (270553273..270555034)

Chromosome 1 - NC_050096.1Genomic Context describing neighboring genes Neighboring gene protein FAF-like, chloroplastic Neighboring gene small nucleolar RNA Z247 Neighboring gene uncharacterized LOC103643876 Neighboring gene protein binding protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The regulatory landscape of a core maize domestication module controlling bud dormancy and growth repression. Dong Z, et al. Nat Commun, 2019 Aug 23. PMID 31444327, Free PMC Article
  2. Evidence for a natural allelic series at the maize domestication locus teosinte branched1. Studer AJ, et al. Genetics, 2012 Jul. PMID 22505628, Free PMC Article
  3. Do large effect QTL fractionate? A case study at the maize domestication QTL teosinte branched1. Studer AJ, et al. Genetics, 2011 Jul. PMID 21515578, Free PMC Article
  4. Major regulatory genes in maize contribute to standing variation in teosinte (Zea mays ssp. parviglumis). Weber A, et al. Genetics, 2007 Dec. PMID 17947410, Free PMC Article
  5. A distant upstream enhancer at the maize domestication gene tb1 has pleiotropic effects on plant and inflorescent architecture. Clark RM, et al. Nat Genet, 2006 May. PMID 16642024

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. P39 that carries a mutation in a starch biosynthesis gene sugary1 continue to grow by overriding the high expression level of tb1 that arrests bud outgrowth in maize inbred B73.
    Title: Tillering in the sugary1 sweet corn is maintained by overriding the teosinte branched1 repressive signal.
  2. tb1 is the sole gene for plant architecture traits that segregates in Quantitative trait loci (QTL) mapping populations.
    Title: Do large effect QTL fractionate? A case study at the maize domestication QTL teosinte branched1.
  3. This study places tb1 on top of the domestication hierarchy, demonstrating its critical importance during the domestication of maize from teosinte.
    Title: The regulatory landscape of a core maize domestication module controlling bud dormancy and growth repression.
  4. tb1 contributed to the morphological diversification of teosinte taxa as well as to the domestication of maize
    Title: Evidence for a natural allelic series at the maize domestication locus teosinte branched1.
  5. the polymorphism pattern is consistent with two interfering selective sweeps at Tb1
    Title: Patterns of molecular evolution associated with two selective sweeps in the Tb1-Dwarf8 region in maize.
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General gene information

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Homology

Clone Names

  • AC233950.1_FG002

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of secondary shoot formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor TEOSINTE BRANCHED 1
Names
AC233950.1_FG002
teosinte branched1 protein
transcription factor TEOSINTE BRANCHED 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001382583.1 → NP_001369512.1  transcription factor TEOSINTE BRANCHED 1

    Status: VALIDATED

    Source sequence(s)
    CABHLF010000012, CD528050, FL362608, U94494
    UniProtKB/Swiss-Prot
    O04170, Q8W0X2, Q93V44, Q93W12, Q93WE3, Q93WI2, Q93WI5, Q93WK1, Q93WL2, Q945F8, Q945F9, Q945G0, Q945G1, Q945G2, Q945G3, Q945G4, Q94FD2, Q94FD3, Q94FD4, Q94FD5, Q94FD6, Q94FD7, Q94FD8, Q94FD9, Q94FE0, Q94FE1, Q94FE2, Q94FE3, Q94FE4, Q9AR16, Q9AT82, Q9AT83, Q9AT84, Q9AT85
    UniProtKB/TrEMBL
    A0A060CXX0, I3QC16, I3QC25
    Conserved Domains (1) summary
    pfam03634
    Location:115 → 266
    TCP; TCP family transcription factor

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050096.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    272330844..272332595
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q93WI2.2 GenPept UniProtKB/Swiss-Prot:Q93WI2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases