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sept6 septin-6 [ Callorhinchus milii (elephant shark) ]

Gene ID: 103178432, updated on 7-Dec-2023

Summary

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Gene symbol
sept6
Gene description
septin-6
See related
Ensembl:ENSCMIG00000014022
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Also known as
septin6
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704756.1 (13801057..13827116, complement)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890055.1 (13279380..13296456, complement)

NW_024704756.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme E2A (RAD6 homolog) Neighboring gene NFKB repressing factor Neighboring gene UPF3B regulator of nonsense mediated mRNA decay Neighboring gene sosondowah ankyrin repeat domain family d

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequencing and analysis of full-length cDNAs, 5'-ESTs and 3'-ESTs from a cartilaginous fish, the elephant shark (Callorhinchus milii). Tan YY, et al. PLoS One, 2012. PMID 23056606, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables molecular adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytoskeleton-dependent cytokinesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell division site IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of septin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in septin ring IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
septin-6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704756.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    13801057..13827116 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042340618.1 → XP_042196552.1  septin-6 isoform X3

    UniProtKB/TrEMBL
    A0A4W3JNN9, V9KCN1
    Conserved Domains (1) summary
    cd01850
    Location:40 → 307
    CDC_Septin; CDC/Septin GTPase family

  2. XM_042340616.1 → XP_042196550.1  septin-6 isoform X1

    UniProtKB/TrEMBL
    A0A4W3JNN9
    Conserved Domains (1) summary
    cd01850
    Location:40 → 307
    CDC_Septin; CDC/Septin GTPase family

  3. XM_042340617.1 → XP_042196551.1  septin-6 isoform X2

    UniProtKB/TrEMBL
    A0A4W3JNN9
    Conserved Domains (1) summary
    cd01850
    Location:40 → 307
    CDC_Septin; CDC/Septin GTPase family

  4. XM_042340619.1 → XP_042196553.1  septin-6 isoform X4

    UniProtKB/TrEMBL
    A0A4W3JNN9
    Conserved Domains (1) summary
    cd01850
    Location:40 → 307
    CDC_Septin; CDC/Septin GTPase family
Nucleotide Protein
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