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atf2 activating transcription factor 2 [ Callorhinchus milii (elephant shark) ]

Gene ID: 103176469, updated on 11-Mar-2024

Summary

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Gene symbol
atf2
Gene description
activating transcription factor 2
See related
Ensembl:ENSCMIG00000012818
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704747.1 (26143594..26176665)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890067.1 (4842354..4874539, complement)

NW_024704747.1Genomic Context describing neighboring genes Neighboring gene limb and neural patterns a Neighboring gene juxtaposed with another zinc finger protein 1 Neighboring gene TLR4 interactor with leucine rich repeats-like Neighboring gene chimerin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequencing and analysis of full-length cDNAs, 5'-ESTs and 3'-ESTs from a cartilaginous fish, the elephant shark (Callorhinchus milii). Tan YY, et al. PLoS One, 2012. PMID 23056606, Free PMC Article
  2. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cAMP response element binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclic AMP-dependent transcription factor ATF-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704747.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    26143594..26176665
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042336304.1 → XP_042192238.1  cyclic AMP-dependent transcription factor ATF-2 isoform X4

    Conserved Domains (1) summary
    sd00019
    Location:9 → 31
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_007890032.2 → XP_007888223.1  cyclic AMP-dependent transcription factor ATF-2 isoform X1

    See identical proteins and their annotated locations for XP_007888223.1

    UniProtKB/TrEMBL
    A0A4W3IL43, A0A4W3IQI4
    Related
    ENSCMIP00000029782.1
    Conserved Domains (2) summary
    cd14687
    Location:342 → 402
    bZIP_ATF2; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-2 (ATF-2) and similar proteins: a DNA-binding and dimerization domain
    sd00019
    Location:9 → 31
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_007890028.2 → XP_007888219.1  cyclic AMP-dependent transcription factor ATF-2 isoform X1

    See identical proteins and their annotated locations for XP_007888219.1

    UniProtKB/TrEMBL
    A0A4W3IL43, A0A4W3IQI4
    Related
    ENSCMIP00000029766.1
    Conserved Domains (2) summary
    cd14687
    Location:342 → 402
    bZIP_ATF2; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-2 (ATF-2) and similar proteins: a DNA-binding and dimerization domain
    sd00019
    Location:9 → 31
    ZF_C2H2; C2H2 Zn finger [structural motif]

  4. XM_007890029.2 → XP_007888220.1  cyclic AMP-dependent transcription factor ATF-2 isoform X1

    See identical proteins and their annotated locations for XP_007888220.1

    UniProtKB/TrEMBL
    A0A4W3IL43, A0A4W3IQI4
    Conserved Domains (2) summary
    cd14687
    Location:342 → 402
    bZIP_ATF2; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-2 (ATF-2) and similar proteins: a DNA-binding and dimerization domain
    sd00019
    Location:9 → 31
    ZF_C2H2; C2H2 Zn finger [structural motif]

  5. XM_007890031.2 → XP_007888222.1  cyclic AMP-dependent transcription factor ATF-2 isoform X1

    See identical proteins and their annotated locations for XP_007888222.1

    UniProtKB/TrEMBL
    A0A4W3IL43, A0A4W3IQI4
    Conserved Domains (2) summary
    cd14687
    Location:342 → 402
    bZIP_ATF2; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-2 (ATF-2) and similar proteins: a DNA-binding and dimerization domain
    sd00019
    Location:9 → 31
    ZF_C2H2; C2H2 Zn finger [structural motif]

  6. XM_007890030.2 → XP_007888221.1  cyclic AMP-dependent transcription factor ATF-2 isoform X1

    See identical proteins and their annotated locations for XP_007888221.1

    UniProtKB/TrEMBL
    A0A4W3IL43, A0A4W3IQI4
    Conserved Domains (2) summary
    cd14687
    Location:342 → 402
    bZIP_ATF2; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-2 (ATF-2) and similar proteins: a DNA-binding and dimerization domain
    sd00019
    Location:9 → 31
    ZF_C2H2; C2H2 Zn finger [structural motif]

  7. XM_007890033.2 → XP_007888224.1  cyclic AMP-dependent transcription factor ATF-2 isoform X2

    UniProtKB/TrEMBL
    A0A4W3IL43
    Related
    ENSCMIP00000029769.1
    Conserved Domains (2) summary
    cd14687
    Location:334 → 394
    bZIP_ATF2; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-2 (ATF-2) and similar proteins: a DNA-binding and dimerization domain
    sd00019
    Location:9 → 31
    ZF_C2H2; C2H2 Zn finger [structural motif]

  8. XM_042336303.1 → XP_042192237.1  cyclic AMP-dependent transcription factor ATF-2 isoform X3

    UniProtKB/TrEMBL
    V9KVR6
    Conserved Domains (1) summary
    cd14687
    Location:270 → 330
    bZIP_ATF2; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-2 (ATF-2) and similar proteins: a DNA-binding and dimerization domain
Nucleotide Protein
Heading Accession and Version

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