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ASB1 ankyrin repeat and SOCS box containing 1 [ Physeter catodon (sperm whale) ]

Gene ID: 102988917, updated on 10-Mar-2024

Summary

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Gene symbol
ASB1
Gene description
ankyrin repeat and SOCS box containing 1
See related
Ensembl:ENSPCTG00005011108
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 2 NC_041215.1 (136379145..136396469)
102 previous assembly ASM283717v2 (GCF_002837175.2) 2 NC_041215.1 (136379168..136400092)

Chromosome 2 - NC_041215.1Genomic Context describing neighboring genes Neighboring gene period circadian regulator 2 Neighboring gene TRAF3 interacting protein 1 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC114484772 Neighboring gene twist family bHLH transcription factor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ankyrin repeat and SOCS box protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041215.1 Reference ASM283717v5 Primary Assembly

    Range
    136379145..136396469
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024124617.3 → XP_023980385.1  ankyrin repeat and SOCS box protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A2Y9SV31
    Related
    ENSPCTP00005015641.1, ENSPCTT00005017281.1
    Conserved Domains (4) summary
    cd00204
    Location:76 → 209
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd03720
    Location:291 → 332
    SOCS_ASB1; SOCS (suppressors of cytokine signaling) box of ASB1-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The ...
    sd00045
    Location:76 → 105
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:19 → 105
    Ank_2; Ankyrin repeats (3 copies)

  2. XM_028483216.2 → XP_028339017.1  ankyrin repeat and SOCS box protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A455AR17
    Conserved Domains (4) summary
    PHA02878
    Location:103 → 284
    PHA02878; ankyrin repeat protein; Provisional
    cd03720
    Location:303 → 344
    SOCS_ASB1; SOCS (suppressors of cytokine signaling) box of ASB1-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The ...
    sd00045
    Location:88 → 117
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:91 → 182
    Ank_2; Ankyrin repeats (3 copies)

  3. XM_055090928.1 → XP_054946903.1  ankyrin repeat and SOCS box protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A9W2X6C1

  4. XM_028483201.2 → XP_028339002.1  ankyrin repeat and SOCS box protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A455AR01
    Conserved Domains (4) summary
    PHA02878
    Location:124 → 305
    PHA02878; ankyrin repeat protein; Provisional
    cd03720
    Location:324 → 365
    SOCS_ASB1; SOCS (suppressors of cytokine signaling) box of ASB1-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The ...
    sd00045
    Location:109 → 138
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:112 → 203
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein
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