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ANKRD28 ankyrin repeat domain 28 [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102946151, updated on 10-Mar-2024

Summary

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Gene symbol
ANKRD28
Gene description
ankyrin repeat domain 28
Locus tag
UY3_00818
See related
EnsemblRapid:ENSCMYG00015024191
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
31
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 2 NC_057850.1 (197985141..198216433)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 2 NC_051242.1 (198058914..198215568)

Chromosome 2 - NC_057850.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119565390 Neighboring gene uncharacterized LOC122464697 Neighboring gene fructose-bisphosphate aldolase A-like Neighboring gene uncharacterized LOC119565391 Neighboring gene biotinidase Neighboring gene 2-hydroxyacyl-CoA lyase 1 Neighboring gene collagen like tail subunit of asymmetric acetylcholinesterase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sea turtle fibropapilloma tumors share genomic drivers and therapeutic vulnerabilities with human cancers. Duffy DJ, et al. Commun Biol, 2018. PMID 30271945, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein localization to ciliary inversin compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ciliary inversin compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A
Names
Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_057850.1 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    197985141..198216433
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043540995.1 → XP_043396930.1  serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A isoform X2

    Related
    ENSCMYP00015037020.1, ENSCMYT00015045507.1
    Conserved Domains (5) summary
    PHA02874
    Location:554 → 863
    PHA02874; ankyrin repeat protein; Provisional
    PHA03095
    Location:22 → 310
    PHA03095; ankyrin-like protein; Provisional
    COG0666
    Location:396 → 517
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:76 → 104
    ANK; ANK repeat [structural motif]
    cl39094
    Location:772 → 958
    Ank_2; Ankyrin repeats (3 copies)

  2. XM_043540994.1 → XP_043396929.1  serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A isoform X2

    Conserved Domains (5) summary
    PHA02874
    Location:554 → 863
    PHA02874; ankyrin repeat protein; Provisional
    PHA03095
    Location:22 → 310
    PHA03095; ankyrin-like protein; Provisional
    COG0666
    Location:396 → 517
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:76 → 104
    ANK; ANK repeat [structural motif]
    cl39094
    Location:772 → 958
    Ank_2; Ankyrin repeats (3 copies)

  3. XM_043540996.1 → XP_043396931.1  serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A isoform X3

    Related
    ENSCMYP00015037014.1, ENSCMYT00015045501.1
    Conserved Domains (5) summary
    PHA02874
    Location:526 → 835
    PHA02874; ankyrin repeat protein; Provisional
    PHA03095
    Location:191 → 447
    PHA03095; ankyrin-like protein; Provisional
    COG0666
    Location:404 → 554
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:48 → 76
    ANK; ANK repeat [structural motif]
    cl39094
    Location:27 → 273
    Ank_2; Ankyrin repeats (3 copies)

  4. XM_043540997.1 → XP_043396932.1  serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A isoform X4

    Conserved Domains (6) summary
    PHA02874
    Location:400 → 709
    PHA02874; ankyrin repeat protein; Provisional
    PHA03095
    Location:32 → 300
    PHA03095; ankyrin-like protein; Provisional
    COG0666
    Location:242 → 363
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:464 → 496
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:1 → 39
    Ank_4; Ankyrin repeats (many copies)
    cl39094
    Location:618 → 804
    Ank_2; Ankyrin repeats (3 copies)

  5. XM_037890477.2 → XP_037746405.1  serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A isoform X1

    Related
    ENSCMYP00015037001.1, ENSCMYT00015045488.1
    Conserved Domains (6) summary
    PHA02874
    Location:584 → 893
    PHA02874; ankyrin repeat protein; Provisional
    PHA03095
    Location:52 → 340
    PHA03095; ankyrin-like protein; Provisional
    COG0666
    Location:426 → 547
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:106 → 134
    ANK; ANK repeat [structural motif]
    pfam00023
    Location:957 → 987
    Ank; Ankyrin repeat
    pfam12796
    Location:857 → 950
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein
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