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ADAMTS17 ADAM metallopeptidase with thrombospondin type 1 motif 17 [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102940143, updated on 10-Mar-2024

Summary

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Gene symbol
ADAMTS17
Gene description
ADAM metallopeptidase with thrombospondin type 1 motif 17
Locus tag
UY3_01077
See related
EnsemblRapid:ENSCMYG00015018349
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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See ADAMTS17 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
24
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 10 NC_051250.2 (75464705..75716795, complement)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 10 NC_051250.1 (8337532..8589521)

Chromosome 10 - NC_051250.2Genomic Context describing neighboring genes Neighboring gene myocyte enhancer factor 2A Neighboring gene LysM domain containing 4 Neighboring gene uncharacterized LOC119567202 Neighboring gene ceramide synthase 3 Neighboring gene lines homolog 1 Neighboring gene ankyrin repeat and SOCS box containing 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sea turtle fibropapilloma tumors share genomic drivers and therapeutic vulnerabilities with human cancers. Duffy DJ, et al. Commun Biol, 2018. PMID 30271945, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
A disintegrin and metalloproteinase with thrombospondin motifs 17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_051250.2 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    75464705..75716795 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037911106.2 → XP_037767034.1  A disintegrin and metalloproteinase with thrombospondin motifs 17 isoform X1

    Conserved Domains (6) summary
    smart00209
    Location:532 → 584
    TSP1; Thrombospondin type 1 repeats
    cd04273
    Location:218 → 435
    ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
    pfam05986
    Location:725 → 821
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam01562
    Location:68 → 166
    Pep_M12B_propep; Reprolysin family propeptide
    pfam17771
    Location:452 → 519
    ADAM_CR_2; ADAM cysteine-rich domain
    pfam19030
    Location:1014 → 1066
    TSP1_ADAMTS; Thrombospondin type 1 domain

  2. XM_037911107.2 → XP_037767035.1  A disintegrin and metalloproteinase with thrombospondin motifs 17 isoform X2

    Related
    ENSCMYP00015028495.1, ENSCMYT00015034708.1
    Conserved Domains (6) summary
    smart00209
    Location:532 → 584
    TSP1; Thrombospondin type 1 repeats
    cd04273
    Location:218 → 435
    ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
    pfam05986
    Location:686 → 796
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam01562
    Location:68 → 166
    Pep_M12B_propep; Reprolysin family propeptide
    pfam17771
    Location:452 → 519
    ADAM_CR_2; ADAM cysteine-rich domain
    pfam19030
    Location:989 → 1041
    TSP1_ADAMTS; Thrombospondin type 1 domain
Nucleotide Protein
Heading Accession and Version

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