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ATG4B autophagy related 4B cysteine peptidase [ Myotis brandtii (Brandt's bat) ]

Gene ID: 102261824, updated on 30-Mar-2024

Summary

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Gene symbol
ATG4B
Gene description
autophagy related 4B cysteine peptidase
Locus tag
D623_10035068
Gene type
protein coding
RefSeq status
MODEL
Organism
Myotis brandtii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Myotis
Orthologs
human mouse all
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Genomic context

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See ATG4B in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
101 current ASM41265v1 (GCF_000412655.1) Unplaced Scaffold NW_005353838.1 (14206559..14232579, complement)

NW_005353838.1Genomic Context describing neighboring genes Neighboring gene inhibitor of growth family member 5 Neighboring gene deoxythymidylate kinase Neighboring gene THAP domain containing 4 Neighboring gene BCL2 family apoptosis regulator BOK Neighboring gene serine/threonine kinase 25

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005353838.1 Unplaced Scaffold Reference ASM41265v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome analysis reveals insights into physiology and longevity of the Brandt's bat Myotis brandtii. Seim I, et al. Nat Commun, 2013. PMID 23962925, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-phosphatidylethanolamide deconjugating activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cysteine protease ATG4B
Names
Cysteine protease ATG4B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Myotis brandtii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM41265v1

Genomic

  1. NW_005353838.1 Reference ASM41265v1

    Range
    14206559..14232579 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005857671.2 → XP_005857733.1  cysteine protease ATG4B isoform X1

    Conserved Domains (1) summary
    pfam03416
    Location:130 → 425
    Peptidase_C54; Peptidase family C54

  2. XM_005857675.2 → XP_005857737.1  cysteine protease ATG4B isoform X4

    Conserved Domains (1) summary
    pfam03416
    Location:87 → 382
    Peptidase_C54; Peptidase family C54

  3. XM_005857674.2 → XP_005857736.1  cysteine protease ATG4B isoform X3

    Conserved Domains (1) summary
    pfam03416
    Location:101 → 396
    Peptidase_C54; Peptidase family C54

  4. XM_005857677.2 → XP_005857739.1  cysteine protease ATG4B isoform X6

    Conserved Domains (1) summary
    pfam03416
    Location:58 → 353
    Peptidase_C54; Peptidase family C54

  5. XM_005857676.2 → XP_005857738.1  cysteine protease ATG4B isoform X5

    See identical proteins and their annotated locations for XP_005857738.1

    UniProtKB/TrEMBL
    S7MGC4
    Conserved Domains (1) summary
    pfam03416
    Location:67 → 362
    Peptidase_C54; Peptidase family C54

  6. XM_005857672.2 → XP_005857734.1  cysteine protease ATG4B isoform X2

    Conserved Domains (1) summary
    pfam03416
    Location:130 → 425
    Peptidase_C54; Peptidase family C54
Nucleotide Protein
Heading Accession and Version

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