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atrn attractin [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102220823, updated on 10-Mar-2024

Summary

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Gene symbol
atrn
Gene description
attractin
See related
Ensembl:ENSXMAG00000002433
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 19
Exon count:
32
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 19 NC_036461.1 (21614517..21762845, complement)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372483.1 (432032..577030)

Chromosome 19 - NC_036461.1Genomic Context describing neighboring genes Neighboring gene adaptor related protein complex 5 subunit sigma 1 Neighboring gene GDNF family receptor alpha 4a Neighboring gene eukaryotic translation initiation factor 2-alpha kinase 3 Neighboring gene ribose 5-phosphate isomerase A (ribose 5-phosphate epimerase)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
attractin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036461.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    21614517..21762845 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023352309.1 → XP_023208077.1  attractin isoform X1

    UniProtKB/TrEMBL
    A0A3B5Q7Y3, M3ZJS8
    Related
    ENSXMAP00000002470.2, ENSXMAT00000002475.2
    Conserved Domains (7) summary
    cd03597
    Location:737 → 866
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    cd00041
    Location:77 → 192
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:1012 → 1057
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:283 → 327
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:878 → 929
    PSI; Plexin repeat
    cl26060
    Location:458 → 583
    NanM; N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]
    cl28614
    Location:288 → 515
    BTB; Broad-Complex, Tramtrack and Bric a brac

  2. XM_023352312.1 → XP_023208080.1  attractin isoform X4

    UniProtKB/TrEMBL
    A0A3B5Q7Y3
    Related
    ENSXMAP00000026982.1, ENSXMAT00000034290.1
    Conserved Domains (8) summary
    cd03597
    Location:737 → 866
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    cd00041
    Location:77 → 192
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:1012 → 1057
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:283 → 327
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:878 → 929
    PSI; Plexin repeat
    pfam13854
    Location:332 → 370
    Kelch_5; Kelch motif
    cl26060
    Location:458 → 583
    NanM; N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]
    cl28614
    Location:288 → 515
    BTB; Broad-Complex, Tramtrack and Bric a brac

  3. XM_023352311.1 → XP_023208079.1  attractin isoform X3

    UniProtKB/TrEMBL
    A0A3B5PN86, A0A3B5Q7Y3
    Related
    ENSXMAP00000020618.1, ENSXMAT00000032869.1
    Conserved Domains (8) summary
    cd03597
    Location:737 → 866
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    cd00041
    Location:77 → 192
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:1012 → 1057
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:283 → 327
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:878 → 929
    PSI; Plexin repeat
    pfam13854
    Location:332 → 370
    Kelch_5; Kelch motif
    cl26060
    Location:458 → 583
    NanM; N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]
    cl28614
    Location:288 → 515
    BTB; Broad-Complex, Tramtrack and Bric a brac

  4. XM_023352310.1 → XP_023208078.1  attractin isoform X2

    UniProtKB/TrEMBL
    A0A3B5Q7Y3, A0A3B5QF77
    Related
    ENSXMAP00000028880.1, ENSXMAT00000022568.1
    Conserved Domains (8) summary
    cd03597
    Location:737 → 866
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    cd00041
    Location:77 → 192
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:1012 → 1057
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:283 → 327
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:878 → 929
    PSI; Plexin repeat
    pfam13854
    Location:332 → 370
    Kelch_5; Kelch motif
    cl26060
    Location:458 → 583
    NanM; N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]
    cl28614
    Location:288 → 515
    BTB; Broad-Complex, Tramtrack and Bric a brac
Nucleotide Protein Strain
Heading Accession and Version

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