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Mtus1 mitochondrial tumor suppressor 1 [ Mus musculus (house mouse) ]

Gene ID: 102103, updated on 21-Apr-2024

Summary

Official Symbol
Mtus1provided by MGI
Official Full Name
mitochondrial tumor suppressor 1provided by MGI
Primary source
MGI:MGI:2142572
See related
Ensembl:ENSMUSG00000045636 AllianceGenome:MGI:2142572
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
MD44; Atip1; MTSG1; ATBP135; mKIAA1288; Cctsg1-440; B430010I23Rik; B430305I03Rik
Summary
Predicted to enable microtubule binding activity. Acts upstream of or within regulation of macrophage chemotaxis. Located in cytoplasm. Is expressed in several structures, including extraembryonic component; eye; genitourinary system; heart; and nervous system. Orthologous to human MTUS1 (microtubule associated scaffold protein 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in heart adult (RPKM 15.8), cerebellum adult (RPKM 12.8) and 26 other tissues See more
Orthologs
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Genomic context

Location:
8 A4; 8 23.89 cM
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (41443949..41587318, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (40990912..41133983, complement)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 Neighboring gene STARR-seq mESC enhancer starr_21277 Neighboring gene platelet-derived growth factor receptor-like Neighboring gene STARR-positive B cell enhancer ABC_E9310 Neighboring gene STARR-seq mESC enhancer starr_21279 Neighboring gene RIKEN cDNA B430010I23 gene Neighboring gene predicted gene 16193 Neighboring gene STARR-seq mESC enhancer starr_21283 Neighboring gene STARR-seq mESC enhancer starr_21286 Neighboring gene predicted gene, 39167 Neighboring gene STARR-seq mESC enhancer starr_21287 Neighboring gene fibrinogen-like protein 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 
  • Endonuclease-mediated (2) 

General gene information

Markers

Clone Names

  • MGC115798

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables microtubule binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within cell cycle IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of macrophage chemotaxis IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within regulation of macrophage chemotaxis IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in microtubule cytoskeleton ISO
Inferred from Sequence Orthology
more info
 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
microtubule-associated tumor suppressor 1 homolog
Names
AT2 receptor-binding protein
AT2 receptor-interacting protein 1
angiotensin II AT2 receptor-interacting protein 1
angiotensin-II type 2 receptor-interacting protein
coiled-coiled tumor suppressor gene 1 protein
coiled-coiled tumor supressor gene 1
mitochondrial tumor suppressor 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001005863.2NP_001005863.1  microtubule-associated tumor suppressor 1 homolog isoform 1

    See identical proteins and their annotated locations for NP_001005863.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes isoform 1.
    Source sequence(s)
    AK143781, AW990620, BC089009
    Consensus CDS
    CCDS40328.1
    UniProtKB/Swiss-Prot
    Q3UP60, Q5HZI1, Q6ITD2, Q6ZPU5, Q80YG5, Q80YV9, Q80ZZ2, Q8BH23, Q8BMM8, Q8C0C8
    UniProtKB/TrEMBL
    A0A0R4J1L9
    Related
    ENSMUSP00000059503.7, ENSMUST00000059115.13
    Conserved Domains (1) summary
    TIGR02168
    Location:8551155
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  2. NM_001005864.3NP_001005864.1  microtubule-associated tumor suppressor 1 homolog isoform 3

    See identical proteins and their annotated locations for NP_001005864.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. This results in shorter protein (isoform 3) with a distinct N-terminus, compared to isoform 1.
    Source sequence(s)
    BB647317, BC043321, DV650567
    Consensus CDS
    CCDS40329.1
    UniProtKB/TrEMBL
    A0A0R4J147
    Related
    ENSMUSP00000091252.5, ENSMUST00000093534.11
    Conserved Domains (2) summary
    pfam09755
    Location:193460
    DUF2046; Uncharacterized conserved protein H4 (DUF2046)
    cl19219
    Location:330406
    DUF342; Protein of unknown function (DUF342)
  3. NM_001005865.4NP_001005865.2  microtubule-associated tumor suppressor 1 homolog isoform 4

    See identical proteins and their annotated locations for NP_001005865.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. This results in shorter protein (isoform 4) with a distinct N-terminus, compared to isoform 1.
    Source sequence(s)
    AC116511
    Consensus CDS
    CCDS40330.1
    UniProtKB/TrEMBL
    A0A0R4J0N9
    Related
    ENSMUSP00000053554.8, ENSMUST00000051379.14
    Conserved Domains (1) summary
    cl19219
    Location:250326
    DUF342; Protein of unknown function (DUF342)
  4. NM_001286413.2NP_001273342.1  microtubule-associated tumor suppressor 1 homolog isoform 1

    See identical proteins and their annotated locations for NP_001273342.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) differs in the 5' UTR, compared to variant 1.
    Source sequence(s)
    AC116511, AC156554
    Consensus CDS
    CCDS40328.1
    UniProtKB/Swiss-Prot
    Q3UP60, Q5HZI1, Q6ITD2, Q6ZPU5, Q80YG5, Q80YV9, Q80ZZ2, Q8BH23, Q8BMM8, Q8C0C8
    UniProtKB/TrEMBL
    A0A0R4J1L9
    Related
    ENSMUSP00000112626.2, ENSMUST00000118835.8
    Conserved Domains (1) summary
    TIGR02168
    Location:8551155
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  5. NM_001403946.1NP_001390875.1  microtubule-associated tumor suppressor 1 homolog isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC116511, AC156554
    UniProtKB/TrEMBL
    A0A0R4J1L9
  6. NM_001403947.1NP_001390876.1  microtubule-associated tumor suppressor 1 homolog isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC116511, AC156554
    UniProtKB/TrEMBL
    A0A0R4J1L9
  7. NM_001403950.1NP_001390879.1  microtubule-associated tumor suppressor 1 homolog isoform 5

    Status: VALIDATED

    Source sequence(s)
    AC116511, AC156554
  8. NM_001403952.1NP_001390881.1  microtubule-associated tumor suppressor 1 homolog isoform 5

    Status: VALIDATED

    Source sequence(s)
    AC116511, AC156554
  9. NM_001403954.1NP_001390883.1  microtubule-associated tumor suppressor 1 homolog isoform 6

    Status: VALIDATED

    Source sequence(s)
    AC116511
  10. NM_001403955.1NP_001390884.1  microtubule-associated tumor suppressor 1 homolog isoform 7

    Status: VALIDATED

    Source sequence(s)
    AC116511
  11. NM_001403956.1NP_001390885.1  microtubule-associated tumor suppressor 1 homolog isoform 8

    Status: VALIDATED

    Source sequence(s)
    AC116511, AC156554
    UniProtKB/TrEMBL
    Q8BXV7
    Related
    ENSMUST00000142936.2

RNA

  1. NR_175785.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC116511, AC156554

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    41443949..41587318 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006509241.4XP_006509304.1  microtubule-associated tumor suppressor 1 homolog isoform X4

    Conserved Domains (1) summary
    TIGR02168
    Location:98417
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  2. XM_036153702.1XP_036009595.1  microtubule-associated tumor suppressor 1 homolog isoform X3

RNA

  1. XR_004934740.1 RNA Sequence

  2. XR_004934738.1 RNA Sequence

  3. XR_004934737.1 RNA Sequence

  4. XR_004934739.1 RNA Sequence