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ARFIP1 ADP ribosylation factor interacting protein 1 [ Columba livia (rock pigeon) ]

Gene ID: 102098697, updated on 10-Mar-2024

Summary

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Gene symbol
ARFIP1
Gene description
ADP ribosylation factor interacting protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Columba livia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Columbiformes; Columbidae; Columba
Also known as
Arfaptin-1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
102 current Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004973242.1 (868389..913881)

NW_004973242.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 154 Neighboring gene tigger transposable element derived 4 Neighboring gene FH2 domain containing 1 Neighboring gene uncharacterized LOC110357619

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004973242 Unplaced Scaffold Reference Cliv_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic diversity and evolution of the head crest in the rock pigeon. Shapiro MD, et al. Science, 2013 Mar 1. PMID 23371554, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein domain specific binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of Arp2/3 complex-mediated actin nucleation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in trans-Golgi network membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
arfaptin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Columba livia Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cliv_1.0 Primary Assembly

Genomic

  1. NW_004973242.1 Reference Cliv_1.0 Primary Assembly

    Range
    868389..913881
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021285377.1 → XP_021141052.1  arfaptin-1 isoform X9

    Conserved Domains (1) summary
    cd07660
    Location:185 → 354
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  2. XM_005500832.2 → XP_005500889.1  arfaptin-1 isoform X2

    UniProtKB/TrEMBL
    A0A2I0LXQ2
    Conserved Domains (1) summary
    cd07660
    Location:185 → 385
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  3. XM_005500834.3 → XP_005500891.1  arfaptin-1 isoform X4

    UniProtKB/TrEMBL
    A0A2I0LXR0
    Conserved Domains (1) summary
    cd07660
    Location:177 → 377
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  4. XM_005500833.3 → XP_005500890.1  arfaptin-1 isoform X3

    UniProtKB/TrEMBL
    A0A2I0LXQ1
    Conserved Domains (1) summary
    cd07660
    Location:183 → 383
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  5. XM_021285372.1 → XP_021141047.1  arfaptin-1 isoform X5

    Conserved Domains (1) summary
    cd07660
    Location:175 → 375
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  6. XM_021285373.1 → XP_021141048.1  arfaptin-1 isoform X6

    Conserved Domains (1) summary
    cd07660
    Location:156 → 356
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  7. XM_021285375.1 → XP_021141050.1  arfaptin-1 isoform X7

    Conserved Domains (1) summary
    cd07660
    Location:153 → 353
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  8. XM_021285376.1 → XP_021141051.1  arfaptin-1 isoform X8

    Conserved Domains (1) summary
    cd07660
    Location:151 → 351
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  9. XM_013372149.2 → XP_013227603.1  arfaptin-1 isoform X1

    UniProtKB/TrEMBL
    A0A2I0LXQ5
    Conserved Domains (1) summary
    cd07660
    Location:195 → 395
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  10. XM_021285374.1 → XP_021141049.1  arfaptin-1 isoform X6

    Conserved Domains (1) summary
    cd07660
    Location:156 → 356
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin
Nucleotide Protein
Heading Accession and Version

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