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Atf5 activating transcription factor 5 [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101832409, updated on 8-Mar-2024

Summary

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Gene symbol
Atf5
Gene description
activating transcription factor 5
See related
EnsemblRapid:ENSMAUG00000019941
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429231.1 (1657463..1661643, complement)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801779.1 (2084755..2088885)

NW_024429231.1Genomic Context describing neighboring genes Neighboring gene IZUMO family member 2 Neighboring gene zinc finger protein 473 Neighboring gene VRK serine/threonine kinase 3 Neighboring gene nucleoporin 62 Neighboring gene interleukin 4 induced 1 Neighboring gene TBC1 domain family member 17 Neighboring gene AKT1 substrate 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclic AMP-dependent transcription factor ATF-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429231.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    1657463..1661643 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005084763.4 → XP_005084820.1  cyclic AMP-dependent transcription factor ATF-5

    See identical proteins and their annotated locations for XP_005084820.1

    UniProtKB/TrEMBL
    A0A1U7R374
    Related
    ENSMAUP00000022542.1, ENSMAUT00000026542.2
    Conserved Domains (1) summary
    cd14692
    Location:205 → 267
    bZIP_ATF4; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-4 (ATF-4) and similar proteins: a DNA-binding and dimerization domain

  2. XM_040736035.1 → XP_040591969.1  cyclic AMP-dependent transcription factor ATF-5

    UniProtKB/TrEMBL
    A0A1U7R374
    Conserved Domains (1) summary
    cd14692
    Location:205 → 267
    bZIP_ATF4; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-4 (ATF-4) and similar proteins: a DNA-binding and dimerization domain

  3. XM_040736034.1 → XP_040591968.1  cyclic AMP-dependent transcription factor ATF-5

    UniProtKB/TrEMBL
    A0A1U7R374
    Conserved Domains (1) summary
    cd14692
    Location:205 → 267
    bZIP_ATF4; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-4 (ATF-4) and similar proteins: a DNA-binding and dimerization domain

  4. XM_013124189.3 → XP_012979643.1  cyclic AMP-dependent transcription factor ATF-5

    See identical proteins and their annotated locations for XP_012979643.1

    UniProtKB/TrEMBL
    A0A1U7R374
    Related
    ENSMAUP00000059840.1, ENSMAUT00000072854.1
    Conserved Domains (1) summary
    cd14692
    Location:205 → 267
    bZIP_ATF4; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-4 (ATF-4) and similar proteins: a DNA-binding and dimerization domain
Nucleotide Protein
Heading Accession and Version

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