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apcdd1l adenomatosis polyposis coli down-regulated 1-like [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101166122, updated on 8-Mar-2024

Summary

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Gene symbol
apcdd1l
Gene description
adenomatosis polyposis coli down-regulated 1-like
See related
EnsemblRapid:ENSORLG00000006724
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 5 NC_019863.2 (13790777..13801127)
102 previous assembly ASM31367v1 (GCF_000313675.1) 5 NC_019863.1 (12656053..12666488)

Chromosome 5 - NC_019863.2Genomic Context describing neighboring genes Neighboring gene SRC proto-oncogene, non-receptor tyrosine kinase Neighboring gene mannosidase beta like Neighboring gene vesicle-associated membrane protein-associated protein B Neighboring gene RAB22A, member RAS oncogene family

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Wnt-protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein APCDD1-like
Names
APC down-regulated 1 like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019863.2 Reference ASM223467v1 Primary Assembly

    Range
    13790777..13801127
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011474985.3 → XP_011473287.1  protein APCDD1-like

    UniProtKB/TrEMBL
    A0A3P9MAK0, H2LQU6
    Related
    ENSORLP00000087382.1, ENSORLT00000052570.1
    Conserved Domains (1) summary
    pfam14921
    Location:61 → 285
    APCDDC; Adenomatosis polyposis coli down-regulated 1
Nucleotide Protein
Heading Accession and Version

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