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AFF2 ALF transcription elongation factor 2 [ Ovis aries (sheep) ]

Gene ID: 101116804, updated on 8-Mar-2024

Summary

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Gene symbol
AFF2
Gene description
ALF transcription elongation factor 2
See related
EnsemblRapid:ENSOARG00020009371
Gene type
protein coding
RefSeq status
MODEL
Organism
Ovis aries
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: X
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2023_10 current ARS-UI_Ramb_v3.0 (GCF_016772045.2) X NC_056080.1 (86659934..87208574, complement)

Chromosome X - NC_056080.1Genomic Context describing neighboring genes Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene pre-rRNA-processing protein TSR2 homolog Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene small nucleolar RNA SNORA18 Neighboring gene proteasome subunit beta type-6-like Neighboring gene FMR1 neighbor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056080.1 Chromosome X Reference ARS-UI_Ramb_v3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables G-quadruplex RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear speck IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: AF4/FMR2 family member 2
Names
AF4/FMR2 family member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016772045.2-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UI_Ramb_v3.0 Primary Assembly

Genomic

  1. NC_056080.1 Reference ARS-UI_Ramb_v3.0 Primary Assembly

    Range
    86659934..87208574 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042242462.1 → XP_042098396.1  LOW QUALITY PROTEIN: AF4/FMR2 family member 2

    UniProtKB/TrEMBL
    W5PIG0
    Related
    ENSOARP00020012152.2, ENSOART00020014699.2
    Conserved Domains (1) summary
    PHA03247
    Location:523 → 861
    PHA03247; large tegument protein UL36; Provisional
Nucleotide Protein Strain
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