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Atg10 autophagy related 10 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100773027, updated on 8-Mar-2024

Summary

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Gene symbol
Atg10
Gene description
autophagy related 10
See related
Ensembl:ENSCGRG00015014215
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613994.1 (877655..1153706, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 2 NC_048595.1 (309792936..310073709, complement)

NW_003613994.1Genomic Context describing neighboring genes Neighboring gene ATPase H+ transporting accessory protein 1 like Neighboring gene ribosomal protein S23 Neighboring gene uncharacterized LOC118238384 Neighboring gene transfer RNA isoleucine (anticodon AAU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Atg12 transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in macroautophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein lipidation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein modification by small protein conjugation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin-like-conjugating enzyme ATG10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613994.1 Reference CriGri_1.0 Primary Assembly

    Range
    877655..1153706 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007644298.4 → XP_007642488.1  ubiquitin-like-conjugating enzyme ATG10 isoform X1

    See identical proteins and their annotated locations for XP_007642488.1

    UniProtKB/TrEMBL
    A0A9J7FFF0
    Conserved Domains (1) summary
    pfam03987
    Location:99 → 190
    Autophagy_act_C; Autophagocytosis associated protein, active-site domain

  2. XM_027437498.2 → XP_027293299.1  ubiquitin-like-conjugating enzyme ATG10 isoform X4

    UniProtKB/TrEMBL
    A0A9J7FHF7

  3. XM_027437497.2 → XP_027293298.1  ubiquitin-like-conjugating enzyme ATG10 isoform X2

    UniProtKB/TrEMBL
    A0A9J7JFH8

  4. XM_016976284.2 → XP_016831773.1  ubiquitin-like-conjugating enzyme ATG10 isoform X5

    UniProtKB/TrEMBL
    A0A9J7FDI1

  5. XM_027437496.1 → XP_027293297.1  ubiquitin-like-conjugating enzyme ATG10 isoform X1

    UniProtKB/TrEMBL
    A0A9J7FFF0

  6. XM_016976283.2 → XP_016831772.1  ubiquitin-like-conjugating enzyme ATG10 isoform X3

    UniProtKB/TrEMBL
    A0A8C2QGR0
    Conserved Domains (1) summary
    pfam03987
    Location:99 → 166
    Autophagy_act_C; Autophagocytosis associated protein, active-site domain

  7. XM_035456710.1 → XP_035312601.1  ubiquitin-like-conjugating enzyme ATG10 isoform X6

    UniProtKB/TrEMBL
    A0A9J7GQN0
    Conserved Domains (1) summary
    pfam03987
    Location:27 → 166
    Autophagy_act_C; Autophagocytosis associated protein, active-site domain

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048595.1 Alternate CriGri-PICRH-1.0

    Range
    309792936..310073709 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027401757.2 → XP_027257558.1  ubiquitin-like-conjugating enzyme ATG10 isoform X1

    UniProtKB/TrEMBL
    A0A9J7FFF0
    Related
    ENSCGRP00015018491.2, ENSCGRT00015022753.2

  2. XM_027401758.2 → XP_027257559.1  ubiquitin-like-conjugating enzyme ATG10 isoform X1

    UniProtKB/TrEMBL
    A0A9J7FFF0

  3. XM_027401761.2 → XP_027257562.1  ubiquitin-like-conjugating enzyme ATG10 isoform X4

    UniProtKB/TrEMBL
    A0A9J7FHF7

  4. XM_027401759.2 → XP_027257560.1  ubiquitin-like-conjugating enzyme ATG10 isoform X2

    UniProtKB/TrEMBL
    A0A9J7JFH8

  5. XM_027401762.1 → XP_027257563.1  ubiquitin-like-conjugating enzyme ATG10 isoform X5

    UniProtKB/TrEMBL
    A0A9J7FDI1

  6. XM_027401756.1 → XP_027257557.1  ubiquitin-like-conjugating enzyme ATG10 isoform X1

    UniProtKB/TrEMBL
    A0A9J7FFF0

  7. XM_027401760.2 → XP_027257561.1  ubiquitin-like-conjugating enzyme ATG10 isoform X3

    UniProtKB/TrEMBL
    A0A8C2QGR0
    Related
    ENSCGRP00015018464.2, ENSCGRT00015022721.2

  8. XM_035440489.1 → XP_035296380.1  ubiquitin-like-conjugating enzyme ATG10 isoform X6

    UniProtKB/TrEMBL
    A0A9J7GQN0
    Conserved Domains (1) summary
    pfam03987
    Location:27 → 166
    Autophagy_act_C; Autophagocytosis associated protein, active-site domain
Nucleotide Protein Strain
Heading Accession and Version

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