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Apobec3b apolipoprotein B mRNA editing enzyme catalytic subunit 3B [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100772476, updated on 8-Mar-2024

Summary

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Gene symbol
Apobec3b
Gene description
apolipoprotein B mRNA editing enzyme catalytic subunit 3B
See related
Ensembl:ENSCGRG00015003727
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human all
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Genomic context

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Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003614714.1 (264326..281898, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 2 NC_048595.1 (377050000..377067744)

NW_003614714.1Genomic Context describing neighboring genes Neighboring gene platelet derived growth factor subunit B Neighboring gene chromobox 7 Neighboring gene uncharacterized LOC103161879 Neighboring gene chromobox 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytidine deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deoxycytidine deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA cytosine deamination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA demethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytidine to uridine editing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in defense response to virus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of single stranded viral RNA replication via double stranded DNA intermediate IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA dC->dU-editing enzyme APOBEC-3B
Names
DNA dC->dU-editing enzyme APOBEC3
putative DNA dC->dU-editing enzyme APOBEC3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003614714.1 Reference CriGri_1.0 Primary Assembly

    Range
    264326..281898 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007650054.4 → XP_007648244.1  DNA dC->dU-editing enzyme APOBEC-3B isoform X2

    UniProtKB/TrEMBL
    A0A9J7FH53
    Conserved Domains (1) summary
    pfam08210
    Location:46 → 178
    APOBEC_N; APOBEC-like N-terminal domain

  2. XM_003509461.5 → XP_003509509.1  DNA dC->dU-editing enzyme APOBEC-3B isoform X1

    See identical proteins and their annotated locations for XP_003509509.1

    UniProtKB/TrEMBL
    G3I2J2
    Conserved Domains (3) summary
    cd01283
    Location:238 → 343
    cytidine_deaminase; Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on ...
    pfam05240
    Location:152 → 197
    APOBEC_C; APOBEC-like C-terminal domain
    pfam08210
    Location:40 → 210
    APOBEC_N; APOBEC-like N-terminal domain

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048595.1 Alternate CriGri-PICRH-1.0

    Range
    377050000..377067744
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027404029.2 → XP_027259830.1  DNA dC->dU-editing enzyme APOBEC-3B isoform X2

    UniProtKB/TrEMBL
    A0A9J7FH53
    Related
    ENSCGRP00015004740.1, ENSCGRT00015005850.2

  2. XM_027404028.2 → XP_027259829.1  DNA dC->dU-editing enzyme APOBEC-3B isoform X1

    UniProtKB/TrEMBL
    G3I2J2
    Related
    ENSCGRP00015004768.1, ENSCGRT00015005882.2
Nucleotide Protein Strain
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