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Atg4c autophagy related 4C cysteine peptidase [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100754372, updated on 8-Mar-2024

Summary

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Gene symbol
Atg4c
Gene description
autophagy related 4C cysteine peptidase
Locus tag
I79_003200
See related
Ensembl:ENSCGRG00015020750
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
12
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613655.1 (1627440..1697138, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 2 NC_048595.1 (50249910..50319961, complement)

NW_003613655.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103160057 Neighboring gene uncharacterized LOC103160057 Neighboring gene 40S ribosomal protein SA-like Neighboring gene small nucleolar RNA SNORD89 Neighboring gene uncharacterized LOC118238302 Neighboring gene uncharacterized LOC118238538

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-phosphatidylethanolamide deconjugating activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cysteine protease ATG4C
Names
Cysteine protease ATG4C
autophagy-related 4C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613655.1 Reference CriGri_1.0 Primary Assembly

    Range
    1627440..1697138 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027396327.2 → XP_027252128.1  cysteine protease ATG4C isoform X3

    UniProtKB/TrEMBL
    A0A9J7JCP6

  2. XM_007614629.4 → XP_007612819.1  cysteine protease ATG4C isoform X2

    See identical proteins and their annotated locations for XP_007612819.1

    UniProtKB/TrEMBL
    A0A9J7FBW1
    Conserved Domains (1) summary
    pfam03416
    Location:49 → 367
    Peptidase_C54; Peptidase family C54

  3. XM_003497599.5 → XP_003497647.1  cysteine protease ATG4C isoform X1

    See identical proteins and their annotated locations for XP_003497647.1

    UniProtKB/TrEMBL
    A0A8C2LC42
    Conserved Domains (1) summary
    pfam03416
    Location:77 → 395
    Peptidase_C54; Peptidase family C54

  4. XM_016966635.3 → XP_016822124.1  cysteine protease ATG4C isoform X1

    UniProtKB/TrEMBL
    A0A8C2LC42
    Conserved Domains (1) summary
    pfam03416
    Location:77 → 395
    Peptidase_C54; Peptidase family C54

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048595.1 Alternate CriGri-PICRH-1.0

    Range
    50249910..50319961 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027400481.2 → XP_027256282.1  cysteine protease ATG4C isoform X3

    UniProtKB/TrEMBL
    A0A9J7JCP6

  2. XM_027400480.2 → XP_027256281.1  cysteine protease ATG4C isoform X2

    UniProtKB/TrEMBL
    A0A9J7FBW1
    Related
    ENSCGRP00015027378.1, ENSCGRT00015033542.2

  3. XM_027400478.2 → XP_027256279.1  cysteine protease ATG4C isoform X1

    UniProtKB/TrEMBL
    A0A8C2LC42
    Related
    ENSCGRP00015027362.1, ENSCGRT00015033524.2

  4. XM_027400479.2 → XP_027256280.1  cysteine protease ATG4C isoform X1

    UniProtKB/TrEMBL
    A0A8C2LC42
Nucleotide Protein Strain
Heading Accession and Version

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