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ASCL3 achaete-scute family bHLH transcription factor 3 [ Canis lupus familiaris (dog) ]

Gene ID: 100686513, updated on 8-Mar-2024

Summary

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Official Symbol
ASCL3provided by VGNC
Official Full Name
achaete-scute family bHLH transcription factor 3provided by VGNC
Primary source
VGNC:VGNC:38175
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
ASH3A
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 21
Exon count:
2
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 21 NC_051825.1 (33170543..33175448, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 21 NC_006603.4 (31865151..31870054, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 21 NC_049242.1 (32899811..32904714, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 21 NC_049281.1 (32440212..32444712, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 21 NC_049762.1 (32605938..32610840, complement)

Chromosome 21 - NC_051825.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111091551 Neighboring gene A-kinase interacting protein 1 Neighboring gene chromosome 21 C11orf16 homolog Neighboring gene TMEM9 domain family member B Neighboring gene uncharacterized LOC119865003 Neighboring gene nuclear receptor interacting protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide identification and analysis of basic helix-loop-helix domains in dog, Canis lupus familiaris. Wang XH, et al. Mol Genet Genomics, 2015 Apr. PMID 25403511

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in developmental process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
achaete-scute homolog 3
Names
achaete-scute complex homolog 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051825.1 Reference ROS_Cfam_1.0

    Range
    33170543..33175448 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038430463.1 → XP_038286391.1  achaete-scute homolog 3

    UniProtKB/TrEMBL
    A0A8C0MYC4, A0A8C0QGX4, A0A8C0QYV6
    Conserved Domains (1) summary
    cd19745
    Location:91 → 149
    bHLH_TS_ASCL3; basic helix-loop-helix (bHLH) domain found in achaete-scute-like protein 3 (ASCL-3) and similar proteins

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049281.1 Alternate UMICH_Zoey_3.1

    Range
    32440212..32444712 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038505767.1 → XP_038361695.1  achaete-scute homolog 3

    Conserved Domains (1) summary
    cd19745
    Location:91 → 149
    bHLH_TS_ASCL3; basic helix-loop-helix (bHLH) domain found in achaete-scute-like protein 3 (ASCL-3) and similar proteins

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049762.1 Alternate UNSW_CanFamBas_1.0

    Range
    32605938..32610840 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038633178.1 → XP_038489106.1  achaete-scute homolog 3

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049242.1 Alternate UU_Cfam_GSD_1.0

    Range
    32899811..32904714 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038569001.1 → XP_038424929.1  achaete-scute homolog 3

    UniProtKB/TrEMBL
    A0A8C0MYC4, A0A8C0QGX4, A0A8C0QYV6
    Conserved Domains (1) summary
    cd19745
    Location:91 → 149
    bHLH_TS_ASCL3; basic helix-loop-helix (bHLH) domain found in achaete-scute-like protein 3 (ASCL-3) and similar proteins

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006603.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    31865151..31870054 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005633638.4 → XP_005633695.1  achaete-scute homolog 3

    UniProtKB/TrEMBL
    A0A8C0MYC4, A0A8C0QGX4, A0A8C0QYV6
    Conserved Domains (1) summary
    cd19745
    Location:91 → 149
    bHLH_TS_ASCL3; basic helix-loop-helix (bHLH) domain found in achaete-scute-like protein 3 (ASCL-3) and similar proteins
Nucleotide Protein
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