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ARFIP1 ADP ribosylation factor interacting protein 1 [ Equus caballus (horse) ]

Gene ID: 100629457, updated on 8-Mar-2024

Summary

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Official Symbol
ARFIP1provided by VGNC
Official Full Name
ADP ribosylation factor interacting protein 1provided by VGNC
Primary source
VGNC:VGNC:15452
See related
Ensembl:ENSECAG00000022286
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 2 NC_009145.3 (80983814..81105192, complement)
102 previous assembly EquCab2.0 (GCF_000002305.2) 2 NC_009145.2 (80799774..80921153, complement)

Chromosome 2 - NC_009145.3Genomic Context describing neighboring genes Neighboring gene FH2 domain containing 1 Neighboring gene uncharacterized LOC111772535 Neighboring gene U6 spliceosomal RNA Neighboring gene tigger transposable element derived 4 Neighboring gene transmembrane protein 154

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein domain specific binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of Arp2/3 complex-mediated actin nucleation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in trans-Golgi network membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
arfaptin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009145.3 Reference EquCab3.0 Primary Assembly

    Range
    80983814..81105192 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003364539.4 → XP_003364587.1  arfaptin-1 isoform X2

    See identical proteins and their annotated locations for XP_003364587.1

    UniProtKB/TrEMBL
    A0A9L0S662
    Related
    ENSECAP00000070321.1, ENSECAT00000083996.1
    Conserved Domains (1) summary
    cd07660
    Location:155 → 355
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  2. XM_014737937.2 → XP_014593423.1  arfaptin-1 isoform X1

    UniProtKB/TrEMBL
    A0A5F5Q1M9, A0A9L0S662
    Related
    ENSECAP00000054696.2, ENSECAT00000074258.2
    Conserved Domains (1) summary
    cd07660
    Location:184 → 384
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  3. XM_005607815.3 → XP_005607872.1  arfaptin-1 isoform X3

    See identical proteins and their annotated locations for XP_005607872.1

    UniProtKB/TrEMBL
    A0A5F5PTZ1, A0A9L0S662
    Related
    ENSECAP00000051969.2, ENSECAT00000073024.2
    Conserved Domains (1) summary
    cd07660
    Location:152 → 352
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  4. XM_003364540.4 → XP_003364588.1  arfaptin-1 isoform X2

    See identical proteins and their annotated locations for XP_003364588.1

    UniProtKB/TrEMBL
    A0A9L0S662
    Related
    ENSECAP00000048915.2, ENSECAT00000067854.2
    Conserved Domains (1) summary
    cd07660
    Location:155 → 355
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  5. XM_005607812.3 → XP_005607869.1  arfaptin-1 isoform X1

    See identical proteins and their annotated locations for XP_005607869.1

    UniProtKB/TrEMBL
    A0A5F5Q1M9, A0A9L0S662
    Related
    ENSECAP00000019866.2, ENSECAT00000023942.3
    Conserved Domains (1) summary
    cd07660
    Location:184 → 384
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  6. XM_023636433.1 → XP_023492201.1  arfaptin-1 isoform X5

    Conserved Domains (1) summary
    cd07660
    Location:34 → 234
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  7. XM_023636432.1 → XP_023492200.1  arfaptin-1 isoform X4

    UniProtKB/TrEMBL
    A0A5F5PK09
    Conserved Domains (1) summary
    cd07660
    Location:78 → 278
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin
Nucleotide Protein
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