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AASDH aminoadipate-semialdehyde dehydrogenase [ Sus scrofa (pig) ]

Gene ID: 100627475, updated on 8-Mar-2024

Summary

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Official Symbol
AASDHprovided by VGNC
Official Full Name
aminoadipate-semialdehyde dehydrogenaseprovided by VGNC
Primary source
VGNC:VGNC:84942
See related
Ensembl:ENSSSCG00000027403
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in kidney (RPKM 2.2), spleen (RPKM 2.0) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
15
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 8 NC_010450.4 (55604394..55645536, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 8 NC_010450.3 (57986062..57998070)

Chromosome 8 - NC_010450.4Genomic Context describing neighboring genes Neighboring gene capping protein inhibiting regulator of actin dynamics Neighboring gene uncharacterized LOC110262105 Neighboring gene uncharacterized LOC110262106 Neighboring gene phosphoribosyl pyrophosphate amidotransferase Neighboring gene phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase Neighboring gene signal recognition particle 72

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in amino acid activation for nonribosomal peptide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acyl-CoA synthetase family member 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010450.4 Reference Sscrofa11.1 Primary Assembly

    Range
    55604394..55645536 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021101363.1 → XP_020957022.1  acyl-CoA synthetase family member 4 isoform X1

    UniProtKB/TrEMBL
    A0A8D1RE65
    Related
    ENSSSCP00000036252.2, ENSSSCT00000064956.3
    Conserved Domains (4) summary
    COG1520
    Location:776 → 1007
    PQQ; Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis]
    sd00039
    Location:773 → 807
    7WD40; WD40 repeat [structural motif]
    pfam00550
    Location:574 → 643
    PP-binding; Phosphopantetheine attachment site
    cl17068
    Location:34 → 550
    AFD_class_I; Adenylate forming domain, Class I superfamily

  2. XM_021101367.1 → XP_020957026.1  acyl-CoA synthetase family member 4 isoform X5

    UniProtKB/TrEMBL
    A0A8D2C6M5
    Conserved Domains (4) summary
    COG1520
    Location:537 → 768
    PQQ; Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis]
    sd00039
    Location:534 → 568
    7WD40; WD40 repeat [structural motif]
    pfam00550
    Location:335 → 404
    PP-binding; Phosphopantetheine attachment site
    cl17068
    Location:6 → 311
    AFD_class_I; Adenylate forming domain, Class I superfamily

  3. XM_021101371.1 → XP_020957030.1  acyl-CoA synthetase family member 4 isoform X7

    Conserved Domains (4) summary
    COG1520
    Location:344 → 575
    PQQ; Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis]
    sd00039
    Location:341 → 375
    7WD40; WD40 repeat [structural motif]
    pfam00550
    Location:142 → 211
    PP-binding; Phosphopantetheine attachment site
    cl17068
    Location:10 → 118
    AFD_class_I; Adenylate forming domain, Class I superfamily

  4. XM_021101372.1 → XP_020957031.1  acyl-CoA synthetase family member 4 isoform X7

    Conserved Domains (4) summary
    COG1520
    Location:344 → 575
    PQQ; Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis]
    sd00039
    Location:341 → 375
    7WD40; WD40 repeat [structural motif]
    pfam00550
    Location:142 → 211
    PP-binding; Phosphopantetheine attachment site
    cl17068
    Location:10 → 118
    AFD_class_I; Adenylate forming domain, Class I superfamily

  5. XM_021101364.1 → XP_020957023.1  acyl-CoA synthetase family member 4 isoform X2

    UniProtKB/TrEMBL
    A0A0B8RTY7, A0A4X1TTX2, A0A8D1RE65
    Related
    ENSSSCP00000041429.3, ENSSSCT00000053182.3
    Conserved Domains (4) summary
    COG1520
    Location:774 → 1005
    PQQ; Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis]
    sd00039
    Location:771 → 805
    7WD40; WD40 repeat [structural motif]
    pfam00550
    Location:572 → 641
    PP-binding; Phosphopantetheine attachment site
    cl17068
    Location:32 → 548
    AFD_class_I; Adenylate forming domain, Class I superfamily

  6. XM_021101369.1 → XP_020957028.1  acyl-CoA synthetase family member 4 isoform X6

    UniProtKB/TrEMBL
    A0A8D2C6M5
    Conserved Domains (4) summary
    COG1520
    Location:535 → 766
    PQQ; Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis]
    sd00039
    Location:532 → 566
    7WD40; WD40 repeat [structural motif]
    pfam00550
    Location:333 → 402
    PP-binding; Phosphopantetheine attachment site
    cl17068
    Location:4 → 309
    AFD_class_I; Adenylate forming domain, Class I superfamily

  7. XM_021101365.1 → XP_020957024.1  acyl-CoA synthetase family member 4 isoform X3

    UniProtKB/TrEMBL
    A0A8D2C6M5
    Conserved Domains (4) summary
    COG1520
    Location:658 → 889
    PQQ; Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis]
    sd00039
    Location:655 → 689
    7WD40; WD40 repeat [structural motif]
    pfam00550
    Location:456 → 525
    PP-binding; Phosphopantetheine attachment site
    cl17068
    Location:83 → 432
    AFD_class_I; Adenylate forming domain, Class I superfamily

  8. XM_021101366.1 → XP_020957025.1  acyl-CoA synthetase family member 4 isoform X4

    UniProtKB/TrEMBL
    A0A8D0QT05
    Conserved Domains (3) summary
    COG1520
    Location:776 → 959
    PQQ; Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis]
    pfam00550
    Location:574 → 643
    PP-binding; Phosphopantetheine attachment site
    cl17068
    Location:34 → 550
    AFD_class_I; Adenylate forming domain, Class I superfamily

  9. XM_021101370.1 → XP_020957029.1  acyl-CoA synthetase family member 4 isoform X6

    UniProtKB/TrEMBL
    A0A8D2C6M5
    Conserved Domains (4) summary
    COG1520
    Location:535 → 766
    PQQ; Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis]
    sd00039
    Location:532 → 566
    7WD40; WD40 repeat [structural motif]
    pfam00550
    Location:333 → 402
    PP-binding; Phosphopantetheine attachment site
    cl17068
    Location:4 → 309
    AFD_class_I; Adenylate forming domain, Class I superfamily

  10. XM_021101368.1 → XP_020957027.1  acyl-CoA synthetase family member 4 isoform X5

    UniProtKB/TrEMBL
    A0A8D2C6M5
    Conserved Domains (4) summary
    COG1520
    Location:537 → 768
    PQQ; Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis]
    sd00039
    Location:534 → 568
    7WD40; WD40 repeat [structural motif]
    pfam00550
    Location:335 → 404
    PP-binding; Phosphopantetheine attachment site
    cl17068
    Location:6 → 311
    AFD_class_I; Adenylate forming domain, Class I superfamily
Nucleotide Protein Strain
Heading Accession and Version

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