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ARL5B ADP ribosylation factor like GTPase 5B [ Sus scrofa (pig) ]

Gene ID: 100627052, updated on 8-Mar-2024

Summary

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Official Symbol
ARL5Bprovided by VGNC
Official Full Name
ADP ribosylation factor like GTPase 5Bprovided by VGNC
Primary source
VGNC:VGNC:95985
See related
Ensembl:ENSSSCG00000031456
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in lung (RPKM 7.7), spleen (RPKM 7.0) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 10 NC_010452.4 (55675129..55700389, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 10 NC_010452.3 (77145924..77172343, complement)

Chromosome 10 - NC_010452.4Genomic Context describing neighboring genes Neighboring gene plexin domain containing 2 Neighboring gene uncharacterized LOC110255701 Neighboring gene MAM and LDL receptor class A domain containing 1 Neighboring gene coiled-coil domain containing 7 Neighboring gene uncharacterized LOC106505183

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ADP-ribosylation factor-like protein 5B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010452.4 Reference Sscrofa11.1 Primary Assembly

    Range
    55675129..55700389 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005668272.3 → XP_005668329.1  ADP-ribosylation factor-like protein 5B

    See identical proteins and their annotated locations for XP_005668329.1

    UniProtKB/TrEMBL
    A0A286ZX20, A0A8D0WLT4, A0A8D1ASX9, A0A8D1RFA2
    Related
    ENSSSCP00000036169.1, ENSSSCT00000066395.2
    Conserved Domains (1) summary
    cd04153
    Location:4 → 176
    Arl5_Arl8; Arf-like 5 (Arl5) and 8 (Arl8) GTPases
Nucleotide Protein
Heading Accession and Version

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