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ANKRD16 ankyrin repeat domain 16 [ Sus scrofa (pig) ]

Gene ID: 100622390, updated on 8-Mar-2024

Summary

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Official Symbol
ANKRD16provided by VGNC
Official Full Name
ankyrin repeat domain 16provided by VGNC
Primary source
VGNC:VGNC:96005
See related
Ensembl:ENSSSCG00000028790
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 1.4), kidney (RPKM 0.9) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
8
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 10 NC_010452.4 (65109043..65149416)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 10 NC_010452.3 (71224784..71260761)

Chromosome 10 - NC_010452.4Genomic Context describing neighboring genes Neighboring gene interleukin 15 receptor subunit alpha Neighboring gene F-box DNA helicase 1 Neighboring gene GDP dissociation inhibitor 2 Neighboring gene transcription activation suppressor family member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ankyrin repeat domain-containing protein 16

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010452.4 Reference Sscrofa11.1 Primary Assembly

    Range
    65109043..65149416
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005668213.3 → XP_005668270.1  ankyrin repeat domain-containing protein 16 isoform X2

    See identical proteins and their annotated locations for XP_005668270.1

    UniProtKB/TrEMBL
    A0A8D0P4K7
    Conserved Domains (3) summary
    cd00204
    Location:39 → 159
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:43 → 136
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:39 → 70
    ANK; ANK repeat [structural motif]

  2. XM_003357778.4 → XP_003357826.1  ankyrin repeat domain-containing protein 16 isoform X1

    UniProtKB/TrEMBL
    A0A480VEZ9, A0A4X1T5N7, I3L9K9
    Related
    ENSSSCP00000020722.1, ENSSSCT00000029024.4
    Conserved Domains (3) summary
    cd00204
    Location:39 → 159
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:43 → 136
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:39 → 70
    ANK; ANK repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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