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agpat3 1-acylglycerol-3-phosphate O-acyltransferase 3 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 100528239, updated on 8-Mar-2024

Summary

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Gene symbol
agpat3
Gene description
1-acylglycerol-3-phosphate O-acyltransferase 3
See related
Ensembl:ENSIPUG00000020311
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
plcc
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 26
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 26 NC_030441.2 (12537961..12563492)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 26 NC_030441.1 (11333379..11358884)

Chromosome 26 - NC_030441.2Genomic Context describing neighboring genes Neighboring gene transmembrane serine protease 3b Neighboring gene pyridoxal (pyridoxine, vitamin B6) kinase b Neighboring gene deleted in lymphocytic leukemia 7 Neighboring gene uncharacterized LOC108259047

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus). Chen F, et al. PLoS One, 2010 Jul 12. PMID 20634964, Free PMC Article
  2. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-acylglycerol-3-phosphate O-acyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
1-acyl-sn-glycerol-3-phosphate acyltransferase gamma
NP_001187438.1
XP_017312276.1
XP_017312277.1
XP_017312278.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001200509.1 → NP_001187438.1  1-acyl-sn-glycerol-3-phosphate acyltransferase gamma

    See identical proteins and their annotated locations for NP_001187438.1

    Status: PROVISIONAL

    Source sequence(s)
    GU588685
    UniProtKB/TrEMBL
    E3TEA5
    Conserved Domains (3) summary
    cd07990
    Location:62 → 256
    LPLAT_LCLAT1-like; Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like
    PLN02380
    Location:12 → 377
    PLN02380; 1-acyl-sn-glycerol-3-phosphate acyltransferase
    pfam16076
    Location:243 → 314
    Acyltransf_C; Acyltransferase C-terminus

RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030441.2 Reference Coco_2.0 Primary Assembly

    Range
    12537961..12563492
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017456787.2 → XP_017312276.1  1-acyl-sn-glycerol-3-phosphate acyltransferase gamma isoform X1

    UniProtKB/TrEMBL
    A0A2D0Q0L8
    Related
    ENSIPUP00000030096.1

  2. XM_017456789.2 → XP_017312278.1  1-acyl-sn-glycerol-3-phosphate acyltransferase gamma isoform X1

    UniProtKB/TrEMBL
    A0A2D0Q0L8

  3. XM_017456788.3 → XP_017312277.1  1-acyl-sn-glycerol-3-phosphate acyltransferase gamma isoform X1

    UniProtKB/TrEMBL
    A0A2D0Q0L8
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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