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APPBP2 amyloid beta precursor protein binding protein 2 [ Sus scrofa (pig) ]

Gene ID: 100525889, updated on 8-Mar-2024

Summary

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Official Symbol
APPBP2provided by VGNC
Official Full Name
amyloid beta precursor protein binding protein 2provided by VGNC
Primary source
VGNC:VGNC:85425
See related
Ensembl:ENSSSCG00000017678
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 14.0), kidney (RPKM 12.1) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 12
Exon count:
13
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 12 NC_010454.4 (37613770..37678710)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 12 NC_010454.3 (39188231..39229781, complement)

Chromosome 12 - NC_010454.4Genomic Context describing neighboring genes Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1D Neighboring gene 60S ribosomal protein L12 pseudogene Neighboring gene 60S ribosomal protein L30-like Neighboring gene CHD1 helical C-terminal domain containing 1 Neighboring gene ubiquitin specific peptidase 32

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
amyloid protein-binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010454.4 Reference Sscrofa11.1 Primary Assembly

    Range
    37613770..37678710
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013981135.2 → XP_013836589.2  amyloid protein-binding protein 2

    UniProtKB/TrEMBL
    A0A480SZ53, A0A4X1SX12, A0A8D0ITF7, A0A8D1A1R1, F1S207
    Related
    ENSSSCP00000074984.1, ENSSSCT00000097355.1
    Conserved Domains (1) summary
    pfam13424
    Location:427 → 504
    TPR_12; Tetratricopeptide repeat
Nucleotide Protein
Heading Accession and Version

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