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ANKRD54 ankyrin repeat domain 54 [ Sus scrofa (pig) ]

Gene ID: 100525518, updated on 8-Mar-2024

Summary

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Official Symbol
ANKRD54provided by VGNC
Official Full Name
ankyrin repeat domain 54provided by VGNC
Primary source
VGNC:VGNC:85344
See related
Ensembl:ENSSSCG00000000120
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 8.2), kidney (RPKM 7.7) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (10003858..10017740)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (7499911..7513774)

Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene chromosome 5 C22orf23 homolog Neighboring gene MICAL like 1 Neighboring gene eukaryotic translation initiation factor 3 subunit L Neighboring gene galanin receptor 3 Neighboring gene glycine C-acetyltransferase Neighboring gene H1.0 linker histone

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ankyrin repeat domain-containing protein 54

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

    Range
    10003858..10017740
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003126032.5 → XP_003126080.3  ankyrin repeat domain-containing protein 54

    UniProtKB/TrEMBL
    A0A4X1VA22, A0A8D1R1J5, F1SKL6
    Related
    ENSSSCP00000000124.4, ENSSSCT00000000126.5
    Conserved Domains (3) summary
    cd00204
    Location:117 → 231
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:117 → 205
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:141 → 172
    ANK; ANK repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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