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ATP6V0D1 ATPase H+ transporting V0 subunit d1 [ Sus scrofa (pig) ]

Gene ID: 100525048, updated on 8-Mar-2024

Summary

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Official Symbol
ATP6V0D1provided by VGNC
Official Full Name
ATPase H+ transporting V0 subunit d1provided by VGNC
Primary source
VGNC:VGNC:85667
See related
Ensembl:ENSSSCG00000002776
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in kidney (RPKM 50.3), lung (RPKM 45.0) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (28090180..28132080, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (25357269..25399102, complement)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene zinc finger DHHC-type containing 1 Neighboring gene uncharacterized LOC110260944 Neighboring gene hydroxysteroid 11-beta dehydrogenase 2 Neighboring gene agouti related neuropeptide Neighboring gene RHO family interacting cell polarization regulator 1 Neighboring gene proline-rich protein HaeIII subfamily 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables proton-transporting ATPase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vacuolar acidification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vacuolar transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in early endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of plasma membrane proton-transporting V-type ATPase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of proton-transporting V-type ATPase, V0 domain IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of vacuolar proton-transporting V-type ATPase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
V-type proton ATPase subunit d 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    28090180..28132080 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003126946.4 → XP_003126994.1  V-type proton ATPase subunit d 1

    See identical proteins and their annotated locations for XP_003126994.1

    UniProtKB/TrEMBL
    A0A4X1UJS8, A0A8D0QB91, A0A8D0QBC3
    Related
    ENSSSCP00000002995.3, ENSSSCT00000003074.5
    Conserved Domains (1) summary
    pfam01992
    Location:16 → 344
    vATP-synt_AC39; ATP synthase (C/AC39) subunit
Nucleotide Protein
Heading Accession and Version

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